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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataacactttgggactgttgtatgcttgaggataagttatatatgcaccattggctaagaacattttgttaatgggacccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCCGTGCCAAAAAGTACAATGACACACGGCCCTACTTGATTGAAATCATGTA

Basic information

species Vitis vinifera
transcript Vv16s0050g01110.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586669|gb|DV222463.1|DV222463
EST:     GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAG                         GTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
genomic: GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataa ... ccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
EST: gi|161721296|gb|FC070042.1|FC070042
EST:     GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAG                         GTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
genomic: GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataa ... ccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
EST: gi|351014648|gb|FQ437650.1|FQ437650
EST:     GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAG                         GTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
genomic: GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataa ... ccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
EST: gi|110698435|gb|EE075933.1|EE075933
EST:     GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAG                         GTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC
genomic: GCATAGTAGCCTTATTTTTGGAACGAACCTCACTGATGTTGTAATTACAGgtaataataa ... ccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttatatatgcaccattggctaagaacattttgttaatgggacccttcaccagGTGGCAATGGAACCCTCAATGGTCAGGGTAAATACTGGTGGGACAAGTTCCGTGCCAAAAAGTACAATGACACACGGCCCTACTTGATTGAAATCATGTA
                                 tgttaat  putative branch site (score: 3)
                                            cccttcacc  putative PPT
                          aacattttgttaat  TA-rich tract