1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttttcctcctactcctttcctcattcttcttaaacacctctggtcgctgagaaatcttcctggacattttctcggtaaccaaacagtggattttctgtttgatcattctaaaaccttttggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGATCACAAATGCAGTTCCAGCCATAGCCCTCCTCTCCTATGGCTTCTTCC
species | Vitis vinifera |
transcript | Vv16s0050g01090.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGEST: gi|110387779|gb|EC952475.1|EC952475
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGEST: gi|34549741|gb|CF517973.1|CF517973
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGEST: gi|34544824|gb|CF513056.1|CF513056
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGEST: gi|110422537|gb|EC988863.1|EC988863
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGEST: gi|110388927|gb|EC953729.1|EC953729
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGEST: gi|110362556|gb|EC926099.1|EC926099
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
EST: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG TCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
genomic: GATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAGgttttcctcc ... tggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCG
ggtaaccaaacagtggattttctgtttgatcattctaaaaccttttggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGATCACAAATGCAGTTCCAGCCATAGCCCTCCTCTCCTATGGCTTCTTCC
ttctaaa putative branch site (score: 2)
cctttt CT-rich tract
attctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcctcctactcctttcctcattcttcttaaacacctctggtcgctgagaaatcttcctggacattttctcggtaaccaaacagtggattttctgtttgatcattctaaaaccttttggattgcagTCCCACCATAAACCAAGAGAAGGTCCATTCGAGCTCAACGATGTTTTCGCGATCACAAATGCAGTTCCAGCCATAGCCCTCCTCTCCTATGGCTTCTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC