Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatacttacaactttgagtttaacctacattgttctcaccacctttgaggaatgcctgatgctactagttctaccatttttccctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGATGAGATTTCAAGTTCAATACAAGATACATACAGGCCCAGAACAACTAACC

Basic information

species Vitis vinifera
transcript Vv16s0050g00800.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G37690.1 (Glycine max), 3'ss of exon 3
gtagatacttacaactttgagtttaacctacattgttctcaccacctttgaggaatgcct-gatgctactagttctaccatttttccctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGATGAGATTTCAAGTTCAATACAAGATACATACAGGCCCAGAACAACTAACC
|| | | || |  | ||| |  | ||  ||  || | |  |   |  |  |   |||| |  ||| || |  ||   ||||||  |||  ||  |||| ||||||| |||||||||||| || ||||||  |||||||||| ||||||| | || |||| |||  ||  | |||||||   |||  | |   ||  
gttggtgctaaatattttcaagtaaa--tattttatgccaattccactacatagatgctttaatgttattgctt--gccatttccccccttt--agGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATA

upper sequence: Vv16s0050g00800.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G30120.1 (Glycine max), 3'ss of exon 3
-gtagatacttacaactttgagtttaacctacattgttctcaccacctttgaggaatgcctgatgctactagttctaccatttttccctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGATGAGATTTCAAGTTCAATACAAGATACATACAGGCCCAGAACAACTAACC
  | | | || |  ||||| || | ||  ||  || | |  |   |  |  | | |||| |  |     |  | ||  |  ||||||||||| ||||| ||||||| |||||||||||| || |||||   |||||||||| ||||||| | || |||| | |  ||  | |||||||   |||    |  |||  
gttgggtgctaaatactttcaggtaaa--tattttatgccaattccactacatggatgctt--taacgttgttgctttccattttccctctt-tagGATGTTTCAAGGGAATTTAAGAGTACACTTGAGCGGGAGATTGGTCTTGATGACAATTTAAGTCCTACCCAGAACACATACAATTCCAATGTACGTAATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351024828|gb|FQ430653.1|FQ430653
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|351014666|gb|FQ437866.1|FQ437866
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|351024434|gb|FQ426243.1|FQ426243
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|110375864|gb|EC940884.1|EC940884
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|77581466|gb|DV219665.1|DV219665
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAACTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|110387630|gb|EC952313.1|EC952313
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|351026337|gb|FQ428349.1|FQ428349
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|110402322|gb|EC959863.1|EC959863
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|26262405|gb|CA813468.1|CA813468
EST:     ATTTGGGAAAGACTTTGCGTGAANTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|161716016|gb|FC068769.1|FC068769
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
EST: gi|351025830|gb|FQ427842.1|FQ427842
EST:     ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAA                         GAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT
genomic: ATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAgtagatactt ... cctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accacctttgaggaatgcctgatgctactagttctaccatttttccctcttgtagGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGATGAGATTTCAAGTTCAATACAAGATACATACAGGCCCAGAACAACTAACC
                               ttctaccatttttccc  CT-rich tract
                                      attttt  TA-rich tract