Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtttccattcagcagaattacagaggttccatttcacaaaaggatgcagtttgttgcttttctacacattttctgttgtttgtcttttcaaatgagaatctctctccatttacttcctgttttggtgttttacatagtttgagggaagttcttactctcagtgctttggcagGAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACG

Basic information

species Vitis vinifera
transcript Vv16s0050g00770.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G30030.2 (Glycine max), 3'ss of exon 4
gtaagttgtttccattcagcagaattacagaggttccatttcacaaaaggatgcagtttgttgcttttctacacattttctgttgtttgtcttttcaaatgagaatctctctccatttacttcctgttttggtgttttacatagtttgagggaagttcttactctcagtgctttggcagGAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACG
                         || | || || | |||    |        | ||| |||     ||  | |  ||   || ||   ||||    |     || | ||   || || ||| |||||     |||    ||| ||    |||  ||| |||| |||   | ||||||||||||    || | ||||| ||| | |||||||| ||||||||||||||||| |||||||| 
------------------------gtaaatagatttcctttt-tgacctttgaaatttttttgtgggactgaatagatttcctttttgacctttgtgca-----atatgtcagtatctatttc-tgtttcaa-atttggtgtagcttt---gaaaatctaactcccag-attctggcagGAAATTACCTTGTTGAGCCGGTTACGACATCCAAATATTGTGCAGTATTATGGTTCTGAAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttggtgttttacatagtttgagggaagttcttactctcagtgctttggcagGAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACG
                               ttcttac  putative branch site (score: 2)
          ttttacata  TA-rich tract