1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttatctaccatttgattattccattacatttgagtgctcttgctgcttcttttatgaggcttttaacaaactcttaagcttttgttcttccattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAAGCAGGGATTCAGTAAGTCCCTTAGATATACCTTCAGCTAAAGGGCACA
species | Vitis vinifera |
transcript | Vv16s0050g00580.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|83274884|gb|DV938980.1|DV938980
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|30296886|gb|CB973680.1|CB973680
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|30300134|gb|CB976928.1|CB976928
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|110368481|gb|EC932461.1|EC932461
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|110699103|gb|EE077128.1|EE077128
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|110724824|gb|EE100991.1|EE100991
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAAATCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTEST: gi|110405949|gb|EC971507.1|EC971507
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCT
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|110363902|gb|EC927533.1|EC927533
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|161712437|gb|FC061742.1|FC061742
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAEST: gi|30251553|gb|CB969286.1|CB969286
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
EST: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATG GCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
genomic: TTCCTGGCGGTAATTCTGCGGACTTCATGATGCTTGGTCTTGGTGACATGgtatgaaatt ... cattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAA
cttcttttatgaggcttttaacaaactcttaagcttttgttcttccattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAAGCAGGGATTCAGTAAGTCCCTTAGATATACCTTCAGCTAAAGGGCACA
ttttaac putative branch site (score: 2)
cttttgttcttccatt putative PPT
ttttaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctaccatttgattattccattacatttgagtgctcttgctgcttcttttatgaggcttttaacaaactcttaagcttttgttcttccattttgcagGCTATTCCTGCCATGCTTTTGGCTTTAGTTCTCTGTTTTGATCATAGAAAAAGCAGGGATTCAGTAAGTCCCTTAGATATACCTTCAGCTAAAGGGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- -tctacca
- - - - - - - - - - ccattac
- - - - - - - - - - - - - - - - - -gctcttg
- - - - - - - - - - - - - - - - - - - - - ctgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaactc