Sequence
atgc intronic sequence ATGC exonic sequencegttgactgcccttcggaaacaggctgaagtgagcttggagtgttttggattacttttctcttctagtcctcttgaccattttattgtttcaattccaagTAACCATGTTTGTATGTTTTAGAGCTATGATGACAAAGGACCTATTATAGATGCTGCTGTCTGGAATGATAGAGAACTATGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00520.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G25250.1 (Glycine max), 3'ss of exon 6
gttgactgcccttcggaaacaggctgaagtgagcttggagtgttttggattacttttctcttctagtcctcttgaccattttattgtttcaattccaagTAACCATGTTTGTATGTTTTAGAGCTATGATGACAAAGGACCTATTATAGATGCTGCTGTCTGGAATGATAGAGAACTATGGAG--------------------------------------
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--------------------aaactaaaagagacattta-tacttgtgtttgtgctcccactgagaattttttcaacttgaattccttacattgaaaaggaaatgctgttttatgttttagAGCTATGATGATAAAGGGCCTGTCATAGATGCTGTTGTCTGGCATGATGGAGAGGTTTGGAGGGTAGCCCTTGACACACAGAGTCTGGAGGATGATCCAA
upper sequence: Vv16s0050g00520.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G30190.1 (Glycine max), 3'ss of exon 6
gttgactgcccttcggaaacaggctgaagtgagcttggagtgttttggattac-ttttctcttctagtcctcttgaccattttattgtttcaattccaagTAACCATGTTTGTATGTTTTAGAGCTATGATGACAAAGGACCTATTATAGATGCTGCTGTCTGGAATGATAGAGAACTATGGAG--------------------------------------
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--------------------aaactaaaa-gagatatgtatacttgtgtttgcgctccctctgtgaattttgtcaactgaaat-tccttacttttaaaaggaaatgctgttttatgttttagAGCTATGATGATAAAGGGCCTGTCATAGATGCTGTTGTCTGGCATGATGGAGAGGTTTGGAGGGCTGCCCTTGACACACAGAGTCTGGAAGATGATCCAA
upper sequence: Vv16s0050g00520.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 6
gttgactgcccttcggaaacaggctgaagtgagcttggagtgttttggattacttttctcttctagtcctcttgaccattttattgtttcaattccaagTAACCATGTTTGTATGTTTTAGAGCTATGATGACAAAGGACCTATTATAGATGCTGCTGTCTGGAATGATAGAGAACTATGGAG--------------------------------------
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---------------------gacttctatacttgtgttgtgcttgtaacctcctgatcttgctcagtatttagtcaactgagttatcttactaaaaaggcaacgctgttttatgttttagAGTTATGATGATAAAGGGCCTGCCATAGATGCTGTTGTCTGGTATGATGGAGAGGTTTGGAGGGTTGCTCTTGACACACACAGTCTTGAGGATGATCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggattacttttctcttctagtcctcttgaccattttattgtttcaattccaagTAACCATGTTTGTATGTTTTAGAGCTATGATGACAAAGGACCTATTATAGATGCTGCTGTCTGGAATGATAGAGAACTATGGAG
tcttgac putative branch site (score: 3)
ttgtttc putative PPT
attttattgtttcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgactgcccttcggaaacaggctgaagtgagcttggagtgttttggattacttttctcttctagtcctcttgaccattttattgtttcaattccaagTAACCATGTTTGTATGTTTTAGAGCTATGATGACAAAGGACCTATTATAGATGCTGCTGTCTGGAATGATAGAGAACTATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT