Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atacaaactttcctttttaaaatcaatcaataaggaaaatgtagtgaattttctttccaattgtgcatactgaatttatcatactgaaactattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG

Basic information

species Vitis vinifera
transcript Vv16s0050g00080.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G31290.2 (Glycine max), 3'ss of exon 2
-atacaaactttcctttttaaaatcaatcaataaggaaaatgtagtgaat-tttctttccaattgtgcatactgaatttatcatactgaaactattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG
  || ||| |   |     | | |||   | | |   | ||||  ||||| |||     |||   ||  ||   ||   ||   | ||||| | |||  ||| ||||| |||||||| ||  ||  |   |||||||| |||||| | |||||  ||||||| ||||| |||||||||||||| 
actagaaaataaaccacagagattca--tatttaatcacatgttatgaatatttgaggtcaacaatgtctaggaaaccaatttaaatgaaattgttgtgcagGGCTCACAAAAAGCTTTCATCCGTTTCTGCATGGGAAAACAGCAAGAAAGCTGCTGTGGAGGCTGACCTGAAAAAGATTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110397997|gb|EC964042.1|EC964042
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|349827462|gb|FQ422330.1|FQ422330
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110701591|gb|EE079339.1|EE079339
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|351020365|gb|FQ445972.1|FQ445972
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110692641|gb|EE072119.1|EE072119
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110374943|gb|EC939889.1|EC939889
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110394019|gb|EC958374.1|EC958374
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|56409507|gb|CX017759.1|CX017759
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|29783949|gb|CB344101.2|CB344101
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAGAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|37190279|gb|CF609628.1|CF609628
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCATAAAAAGCTATCTGCCACTGAAGCATGGGAG
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAG
EST: gi|30322525|gb|CD005787.1|CD005787
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNAAAAAGCTATCTGCCACTGAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGC
EST: gi|37186543|gb|CF605896.1|CF605896
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|71889696|gb|DT038751.1|DT038751
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|30328116|gb|CD011378.1|CD011378
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|77579827|gb|DV218793.1|DV218793
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|33406229|gb|CF211856.1|CF211856
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|27755276|gb|CB036031.1|CB036031
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110366193|gb|EC929937.1|EC929937
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|33406137|gb|CF211764.1|CF211764
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110380609|gb|EC945888.1|EC945888
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|32246797|gb|CD712616.1|CD712616
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|71885693|gb|DT034748.1|DT034748
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|28965124|gb|CB344157.1|CB344157
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAGAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|30133067|gb|CB918406.1|CB918406
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|56409736|gb|CX017988.1|CX017988
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110416964|gb|EC982982.1|EC982982
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|71872560|gb|DT021615.1|DT021615
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110693803|gb|EE070355.1|EE070355
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|351057040|gb|FQ448557.1|FQ448557
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|352795758|gb|FQ480346.1|FQ480346
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|351033526|gb|FQ446992.1|FQ446992
EST:     TCACTAATCAGATCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110708527|gb|EE086168.1|EE086168
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110422273|gb|EC988591.1|EC988591
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|351019268|gb|FQ429428.1|FQ429428
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110418793|gb|EC984969.1|EC984969
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|27581608|gb|CB004303.1|CB004303
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|351023530|gb|FQ432913.1|FQ432913
EST:     TCACTAATCAGATCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|27580860|gb|CB003555.1|CB003555
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110412405|gb|EC978153.1|EC978153
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|71858022|gb|DT007077.1|DT007077
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|351020250|gb|FQ445857.1|FQ445857
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|30327444|gb|CD010706.1|CD010706
EST:     TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: TCACTAATCAGAGCATGGGAAGAAAGTGAAAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
EST: gi|110414270|gb|EC980097.1|EC980097
EST:     AAAGTGTAAAGCAGAGAACAA                         AGCTCNNNNNNNGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC
genomic: AAAGTGTAAAGCAGAGAACAAgtaagagctt ... tattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattttctttccaattgtgcatactgaatttatcatactgaaactattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG
                           aatttatcata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atacaaactttcctttttaaaatcaatcaataaggaaaatgtagtgaattttctttccaattgtgcatactgaatttatcatactgaaactattgaacagAGCTCAAAAAAAGCTATCTGCCACTGAAGCATGGGAGAACAGCCAAAAAGCATCTGTGGAAGCTGAGCTGAAAAAGATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
atacaaa
- - - - - - - - - -aaatcaa
- - - - - - - - - - - - - - - - -ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaac