Sequence
atgc intronic sequence ATGC exonic sequence...agtgcaaaaaaaatttagtgttgaattcacttctttggtgtcattaattgtttagtctctgtttcttccctgatgattgcttattgaattttttactcagATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G38750.2 (Glycine max), 3'ss of exon 3
agtgcaaaaaaaatttagtgttgaattcacttctttggtgtcattaattgtttagtctctgtttcttccctgatgat-tgcttattgaattttttactcagATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAAT
| |||| || | | | | || || | ||| | | | ||| | || | | | | || || | |||| | |||||||||| |||||||| || ||||| |||||||| |||||||| ||||| || || |||||||||||||||| || || || || ||||| || ||
tttttttaaaatgcaccatgctttgtcatttgaatgtgtatctgagttacttttatatttttttttgccttattcttatatttgttacacttttgaa-cagATTTGGCCCAAAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT
upper sequence: Vv16s0039g02760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G28990.1 (Glycine max), 3'ss of exon 2
agtgcaaaaaaaatttagtgttgaattcacttctttggtgtcattaattgtttagtct--ctgtttcttccctgatgattgcttattgaattttttactcagATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAAT
|| | | ||| || | | | | || | || || |||| || | | ||| || ||| || || | | | |||| ||||||||||||| ||||| || ||||| |||||||| |||||||| ||||| || || |||||||||||||||| || || || || ||||| || ||
-atg-agccatgctttgtcatttcaatgtgtatctgagttacttttatagttttgtttgttttttttttaccttattcttatattgttacacttttgaacagATTTGGCTCAGAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT
upper sequence: Vv16s0039g02760.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G19910.1 (Arabidopsis thaliana), 3'ss of exon 2
-------------------agtgcaaaaaaaatttagtgtt--gaattcacttctttggtgtcattaatt-----gtttagtctctgtttcttccctgatgattgcttattgaattttttactcagATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAAT
|| | ||||||||| |||| | | | | ||| || | |||| | ||| | || | ||||| | | | || |||| |||| || ||||| ||||||||||||||||| || ||||| |||||||| || |||||||| ||||| | |||||||||||| || ||||| ||
gtaagtttagaattcgttctatggcttagggttttagtgttcgaaattgagatttaaaaagggatttgttctaaggcttagggtttgtacttaccacatt--ctgcttttggttactgtttggcagACCTGGCACAGAATCGGTATTTTGAAGATGAAGCATTTATTGGATACTTGAAGTATCTTCAATACTGGCAGCGACCAGAGTACATCAAGTTCATTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383073|gb|EC947422.1|EC947422EST: AGTTGGAATTTGTCCAATGTCTTGCCAATCCCACCTACATTCACT ATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGA
genomic: AGTTGGAATTTGTCCAATGTCTTGCCAATCCCACCTACATTCACTgtatgttttt ... ttttactcagATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattgtttagtctctgtttcttccctgatgattgcttattgaattttttactcagATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAAT
ttttttactc CT-rich tract
ttattgaattttttac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtgcaaaaaaaatttagtgttgaattcacttctttggtgtcattaattgtttagtctctgtttcttccctgatgattgcttattgaattttttactcagATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAAT
- - -aaaaaaa
- - - - - - - - - - - - - - - - - -tggtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc