Sequence
atgc intronic sequence ATGC exonic sequencegtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgctttgcttctatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os01g74520.1 (Oryza sativa), 3'ss of exon 2
gtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgctttgctt-ctatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
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-------gtttgcttccaatctcctcctcctcctcctttttttcatgtcaggcttaccacattcctcttctctattttttaagGCTCATCTCAAAGCTTAATCCTTTTCCTGGGATGAAGCATCTAGATGTGGCTGGTGGAACAG
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G438673_T02 (Zea mays), 3'ss of exon 2
gtttgaatcttgctgttgtgctcaaatagttatttca-aattatgatgctttgcttctatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
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-----gttgctgctgcttaccctttccatttcttttatggatatcttcctttatcact-taacctcttattcttttctttcagGCTTATTTCCAAGCTGAACCCCTTTCCGGCAATGAAGCATCTCGATGTGGCTGGTGGAACAG
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G065210_T03 (Zea mays), 3'ss of exon 3
gtttgaatcttgctgttgtgctcaaatagttatttca-aattatgatgctttgcttctatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
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-----gttgctgctgcttgccctttctgtttcttttatggatatcttcctttgtcactcaaact-ccgattcttttctttcagGCTTATTTCCAAGCTGAACCCCTTTTCGGGGATGAAGCATCTCGATGTGGCTGGTGGAACAG
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G22890.1 (Glycine max), 3'ss of exon 2
--------------gtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgctttgcttctatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
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gttacagcattacattctcatttcttcaattgtttcaatcttgttgctattgctgttgg-actttgcttaaatctgtgattattttctgct--cagGTTAGTTTCCAAGCTGAATCCGTTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
upper sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G03210.2 (Glycine max), 3'ss of exon 1
gtttgaatcttgctgttgtgctcaaatagttatttcaa----atta-tgatgctttg--cttc---tatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
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gttacaacattacattctcattttcataatagtttcaatcatattactgttgctttggactttgcttaaatctgtgattattttctgctcagGTTAGTTTCGAAGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTTGCTGGTGGCACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110709114|gb|EE084301.1|EE084301EST: CTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAG GTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGC
genomic: CTCATGAATGATTTGATGAGTGGTGGATTGCATAGATTATGGAAGGATAGgtttgaatct ... tgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttatttcaaattatgatgctttgcttctatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
tttattttt CT-rich tract
tatattagtttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgaatcttgctgttgtgctcaaatagttatttcaaattatgatgctttgcttctatattagtttatttttgcttaacagGTTGGTCTCTAAATTGCATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA