1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtaccaaattctagggaaaaaaaatatatcattctctccgtcctccacttcacctgaactccatttctctgacttccttcttccattgcagATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAACTTGGAAGAAGATTTGTCTGATTTGCTTGTGCACTTTCCGTGTAGCTCT
species | Vitis vinifera |
transcript | Vv16s0039g01450.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCAATGGCCTCCTCTGACTTCTCAACAACCAGCTCTCGGTCTCCCCACG ATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAAEST: gi|34320472|gb|CF373226.1|CF373226
genomic: CCCAATGGCCTCCTCTGACTTCTCAACAACCAGCTCTCGGTCTCCCCACGgtgagtacca ... tccattgcagATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAA
EST: CCCAATGGCCTCCTCTGACTTCTCAACAACCAGCTCTCGGTCTCCCCACG ATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAAEST: gi|110690384|gb|EE067434.1|EE067434
genomic: CCCAATGGCCTCCTCTGACTTCTCAACAACCAGCTCTCGGTCTCCCCACGgtgagtacca ... tccattgcagATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAA
EST: CCCAATGGCCTCCTCTGACTTCTCAACAACCAGCTCTCGGTCTCCCCACG ATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAA
genomic: CCCAATGGCCTCCTCTGACTTCTCAACAACCAGCTCTCGGTCTCCCCACGgtgagtacca ... tccattgcagATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAA
tccgtcctccacttcacctgaactccatttctctgacttccttcttccattgcagATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAACTTGGAAGAAGATTTGTCTGATTTGCTTGTGCACTTTCCGTGTAGCTCT
ctctgac putative branch site (score: 3)
ctccatttctctgact CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaccaaattctagggaaaaaaaatatatcattctctccgtcctccacttcacctgaactccatttctctgacttccttcttccattgcagATAACTGAAAGAATCATGATTTCGGATTTCCAGGAGCTCTACCATTTGCAACTTGGAAGAAGATTTGTCTGATTTGCTTGTGCACTTTCCGTGTAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG