Sequence
atgc intronic sequence ATGC exonic sequencegtttgaattattgtgtttttgtaattttgaatttggaaatgatgttatggggtttatgcaatttgggcttgataaagatgagggttttggatttatagGCGCTGTTCAATTCATTGCCACCTGAGGATTACAAGGATGGGGTGTTGGTTTTAGGCGGTGATGGCCGATATTTCAACCGGGAAGCTGCACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G29230.1 (Glycine max), 3'ss of exon 3
gtttgaattattgtgtttttgtaattttgaatttggaaatgatgttatggggtttatgcaatttgggcttgataaagatgagggttttggatttatagGCGCTGTTCAATTCATTGCCACCTGAGGATTACAAGGATGGGGTGTTGGTTTTAGGCGGTGATGGCCGATATTTCAACCGGGAAGCTGCACAG
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--------------gtttgtagaattccatgc---aatgtatgattgcatgaattatgcattttg--cttg-taagtgaaaattctgtgcatctgtagGCCCTGTTTAATTCATTGCCTCCCGAGGATTACAAGAATGGCTTGTTGGTGTTGGGAGGTGATGGGCGATACTTTAATCGGGAAGCTGCACAG
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G38590.1 (Glycine max), 3'ss of exon 3
gtttgaattattgtgtttttgtaattttgaatttggaaatgatgttatggggtttatgcaatttgggcttgataaagatgagggttttg--gatttatagGCGCTGTTCAATTCATTGCCACCTGAGGATTACAAGGATGGGGTGTTGGTTTTAGGCGGTGATGGCCGATATTTCAACCGGGAAGCTGCACAG
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--------------gtctgtagaattccatgc---aacgtatgattgcgtgatttatgcattttgcttttcatgtaagtgaaaattctgtgcatctgtagGCTCTGTTTAATTCATTGCCACCGGAGGACTACAAGAATGGTTTGTTGGTGTTGGGAGGTGATGGTCGATACTTTAATCAGGAAGCTGCACAG
upper sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttgaattattgtgtttttgtaattttgaatttggaaatgatgttatggggtttatgcaatttgggcttgataaagatgagggttttggatttatagGCGCTGTTCAATTCATTGCCACCTGAGGATTACAAGGATGGGGTGTTGGTTTTAGGCGGTGATGGCCGATATTTCAACCGGGAAGCTGCACAG
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---------gttccgattc-gtaaactcctatttgattgcaa-atattagaatggatg--attt---ttttgtaattgtaattgtttatgtggtatagGCATTGTTTAATTCATTGCCACTTGAGGATTATAAGAATGCAACGTTGGTTTTAGGAGGTGATGGTCGTTACTTTAACAAAGAAGCTTCACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttatggggtttatgcaatttgggcttgataaagatgagggttttggatttatagGCGCTGTTCAATTCATTGCCACCTGAGGATTACAAGGATGGGGTGTTGGTTTTAGGCGGTGATGGCCGATATTTCAACCGGGAAGCTGCACAG
gcttgat putative branch site (score: 5)
atttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgaattattgtgtttttgtaattttgaatttggaaatgatgttatggggtttatgcaatttgggcttgataaagatgagggttttggatttatagGCGCTGTTCAATTCATTGCCACCTGAGGATTACAAGGATGGGGTGTTGGTTTTAGGCGGTGATGGCCGATATTTCAACCGGGAAGCTGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC