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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatgcataacatgtttttagggtgcagagtgattgcaccagtagcttgaggctatcatctgttatcaaaatagaattacttatttttttcccctgacagTGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAG

Basic information

species Vitis vinifera
transcript Vv16s0022g02060.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 4
--------------gtatgaatgcataacatgtttttagggtgcagagtg-attgcaccagtagcttgaggctatcatctgttatcaaaatagaattacttatttt------tttcccctgacagTGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAG
               ||||    |  |    |||| |  | ||||   |  | || |  | | | || |   |    | | |  |||| | |   ||| |  ||||      |||   |    ||||  |||||  | || |||||||||||||| || || ||||| ||||||| | |||||||||| || || ||||| || ||||||
gtatggttatacttatatgttccccgatgtagtttctcagttgcatcttataatggattattggatttaactttatttatatactcaata-atttttattctttttaaacaattttttcccttagTGCCACAAGAGCATTTCAGTTTCAAGATGTATTCTCACTGGAAAATGAAGATTCTGATGATGTGACAACTTTGATTGACAAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71890836|gb|DT039891.1|DT039891
EST:     GCTAAAATTACTCATGAGAAAGCCAAGAGAAACGATACACAAGAAGCAAA                         TGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGG
genomic: GCTAAAATTACTCATGAGAAAGCCAAGAGAAACGATACACAAGAAGCAAAgtatgaatgc ... cccctgacagTGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGG
EST: gi|77585285|gb|DV221734.1|DV221734
EST:     GCTAAAATTACTCATGAGAAAGCCAAGAGAAACGATACACAAGAAGCAAA                         TGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGG
genomic: GCTAAAATTACTCATGAGAAAGCCAAGAGAAACGATACACAAGAAGCAAAgtatgaatgc ... cccctgacagTGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgaggctatcatctgttatcaaaatagaattacttatttttttcccctgacagTGGTACAAGGTCTTTCCAGTTTCAAGATGTTTTTTCTCTGGATAATGAAGGTACTGATGATGTAACGACCTTGATAGATAAAAAG
                               ttacttatttttttcc  CT-rich tract
               tgttatcaaaatagaa  TA-rich tract