Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtcatttccatagcaaatgaagtgccacaggctatttatttcttgacatggaacttctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT

Basic information

species Vitis vinifera
transcript Vv16s0022g01460.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os10g08930.1 (Oryza sativa), 3'ss of exon 2
ctgtcatttccatagcaaatgaagtgccacaggctatttatttcttgacatggaacttctc---ccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
| | | | ||| | |||| | | | ||| |||| | ||||| | ||| || | ||| ||| ||||||| ||||| ||||| | || ||| | || | |||||||| ||||| |||||| ||||||| |||||||| || |||||||||||||||||||| ||
ttaagctagggaaatttgctgacatcttgttggcttaacttcacattggttgggttttcttgtgctaattcaggactattttgcgttcttttctgac---cagGAACAAACACATGGGATCGTTTCGAGTTCCGCATCCACAAGCGGGTGATCGATCTCATCAGCTCCCCAGATGTTGTGAAGCAGATCACCTCCATCACCAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g04290.1 (Oryza sativa), 3'ss of exon 2
ctgtcatttccatagcaaatgaagtgccacaggct--atttatttcttgacatggaacttctcc----caattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
| || |||| || | ||| | | | || |||| | | || | | || |||| | || | ||| |||| || |||||||| ||||| | |||||| | || || ||||| | ||||||||||| |||||||| ||||||| || |||||||||||||| ||||| ||
----tagttgtatagaaacatcaatgcaatatttttagttgccctctttgttctgcatctcccatgggcggttggaaatgttaatgatgtaaacattgtttca--gGTACCAACACCTGGGATCGGTTTGAGATGCGGGTGCACAAAAGGGTGATTGATCTTGTCAGCTCTGCAGATGTTGTCAAGCAGATCACCTCAATCACCAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G067303_T02 (Zea mays), 3'ss of exon 2
--------ctgtcatttccatagcaaatgaagtgccacaggctatttatttcttgacatggaacttctcccaattctaaatcattg-tggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
| | ||| || ||| || | | | || | || || || | || | | | | ||| | || | |||||| | ||||||| ||||| ||||| | |||||| | || |||||||| | |||||||| || ||||||| || ||||| || |||||||||||||||||||||||
actgtcatcaagctcttctattgcacgtggaatataatggggtgttgat------accggatttttgttgtggatttggctgattactttctaattttttggt---cagGAACAAACACATGGGATCGGTTTGAGTTCCGCATTCACAAGAGGGTGATTGACCTAATCAGCTCCCCTGATGTGGTGAAGCAGATCACCTCCATCACAAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G32690.1 (Glycine max), 3'ss of exon 2
-ctgtcatttccatagcaaatgaagtgccacaggctatttat---ttcttgacatggaacttctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
| | | || | | | || | | || | || | | || ||| || || | || ||| ||| || |||| |||||||| |||||||||||||| |||||||| |||||| |||||||||| |||| ||| || |||||||||||||||||||| ||||| ||||| ||
accgatagttgtgttacttagcttgttgatttgatttttgaagtattttggtcaatgaatgatattaaagcctgtgttcatgaa----actgcttgtttttcagGTACCAACACATGGGACAGATTTGAACTTCGTGTGCACAAGAGAGTGATTGACCTCTACAGTTCCCCAGATGTAGTTAAGCAGATTACCTCTATCACGAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G29800.1 (Glycine max), 3'ss of exon 2
---ctgtcatttccatagcaaatgaagtgcca-caggctatttatttcttgacatggaacttctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
|| | || | | | ||| ||| | | || || ||| ||| | || | | | |||| | || || ||| || ||| |||||||| ||||| |||||||| |||||||| |||||| |||||||||| |||| ||| || |||||||| ||||||||||| ||||| ||||||||
ggcttgctgacttgatttttgaagtattgctttcagtgtctatactttctga-atgttagttattctgccttgtgttcat-gaaact-gctgcttgtttt-tagGTACCAACACATGGGATAGATTTGAACTTCGTGTCCACAAGAGAGTGATTGACCTCTACAGTTCCCCAGATGTGGTTAAGCAGATTACCTCTATCACAAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G29810.1 (Glycine max), 3'ss of exon 2
-ctgtcatttccatagcaaatgaagtgccacaggctatttatttcttgacatggaact-tctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
|| | | | || | | | | | | | ||| |||||| |||| || | || ||| | | | || | ||| || ||| |||||||| |||||||||||||| |||||||| |||||| | |||||||| |||| ||| || |||||||| ||||||||||| ||||| ||||| ||
actattgtgttcaatgtatac-actttctgaatgctgtttattg-ttgatattatttgatttctgaatgccttgtgttcatgaaactgccttttgtttttagGTACCAACACATGGGACAGATTTGAACTTCGTGTGCACAAGAGGGTGATTGACCTCTACAGTTCCCCAGATGTGGTTAAGCAGATTACCTCTATCACGAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G04840.1 (Glycine max), 3'ss of exon 3
--ctgtcatttccatagcaaatgaagtgccacaggctatttatttcttgacatggaacttctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
||| ||| | | | | |||| | ||| || | ||| | | || | || ||| | || ||| || ||| |||| |||||||| ||||||||||||||||| ||||| ||||| |||| ||||| |||| ||| || || ||||| ||||||||||| ||||| ||||||||
caatgttgttttattcttaggttttctcattgtccctatctgtttgctgtcttggtgtattttgtt-ttggatattattttcact-actgcttttttcccagGCACCAACACATGGGACAGATTTGAGCTGCGTGTACACAAAAGAGTCATTGACCTCTACAGTTCCCCTGATGTGGTTAAGCAGATAACCTCGATCACAAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G00450.1 (Glycine max), 3'ss of exon 2
-ctgtcatttccatagcaaatgaagtgccacaggctatttatttcttgacatggaacttctcccaattcta--aatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
|||| |||| | | || || | ||| | | ||| | | | || ||| | || ||| ||| |||| || |||||||| ||||||||||||||||| ||||| |||||| || | |||||||||| ||| || || ||||| ||||||||||| || || ||||||||
gctgt-attttggttttgggtattgtcattatccttacctgtttaaagtcttggtgtattttatggatatattaatgttaatgagctgcttcttgtttca--gGCACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAATTATTGATCTCTACAGTTCCCCTGATGTGGTTAAGCAGATTACTTCAATCACAAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G32680.1 (Glycine max), 3'ss of exon 2
--------ctgtcat-ttccatagcaaatgaagtgccacaggctatttatttcttgacatggaacttctcccaat-tctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
||| | || | |||| | | | | | ||| ||| | | ||| | | | | | | | || ||| |||| ||| |||||||| |||||||||||||| ||| | || |||||| |||||||||| |||| ||| || |||||||| ||||||||||| ||||| ||||| ||
cagaaatattgttgtgttacttagcttgctgact--tgaatgttttttgtttgtgaaaatgatattctgcattgtgttcatgaaactgctgcttgttttt--------agGTACCAACACATGGGACAGATTTGAACTTAGGGTGCACAAGAGAGTGATTGACCTCTACAGTTCCCCAGATGTGGTTAAGCAGATTACCTCTATCACGAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G45030.1 (Arabidopsis thaliana), 3'ss of exon 2
-------------------------------------------------------------------------ctgtcatttccatagcaaatgaagtgccacaggctatttatttcttgacatggaacttctcccaatt---ctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
|||| ||| | | | | | | | ||| || | | ||||| | ||| | | || | || | | | ||||||||||| || |||||||||||||| ||| | || |||||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||| ||
gtatacttctggttctctcatcttttatgtcttcaaaaacactagagcttgagttttgggaaccgttcctaaagtgtcgcggatttagatcttagaacatgtgattgtgctcaatactt--caagtatcttcttcacattggctgagactcttttaactattggtgttgtaaacagGAACCAATACATGGGACAGATTTGAACTTAGGGTGCACAAGCGAGTGATTGATCTCTTCAGCTCTCCTGATGTGGTCAAGCAAATCACATCCATCACCAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G62300.2 (Arabidopsis thaliana), 3'ss of exon 3
ctgtcatttccatagcaaatgaa-gtgccacaggctattt-atttcttgacatgg--aacttctcccaattc---taaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
| | | ||| |||| | || ||| || || || | | ||| | ||| ||| | | || | | | |||||||||||||| ||||||||||| |||||| | || ||||||||||| || ||||| ||||||||||| ||||| || |||||||||||||||||||| ||
-------tcttagaatttgtgattgtgctcaatactgttttatactctgtcactgcaagtgtcttcacatttgctgaaactctcttaactattggtattgtaaacagGAACCAACACATGGGACAGATTCGAGCTTAGGGTACACAAGCGAGTTATAGATCTTTTCAGCTCTCCTGATGTGGTCAAGCAGATCACCTCCATCACCAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G47370.2 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------ctgtcatttccatag-caaatgaagtgccacaggctatttatttcttgacatggaacttctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
| || | | | ||| | | | | | ||| | | ||| |||| || | | |||| |||| | |||| ||| ||| ||||| ||||||||||| |||||||| | ||||||||||| || || |||||||||||||| || || || |||||||| ||||| || ||||| ||
gtaactctcatttcatcctctctgcatctacattcttcaaatgttgctaaactcaagtattgcatcgaatgtcttttcatgcaaaacagaacacttttcttgacacggtttcatggtgggt---ttttgtatt---agGTACCAATACTTGGGACAGGTTTGAGCTCAGGGTTCACAAGCGTGTCATCGATCTCTTCAGCTCCCCTGACGTTGTTAAGCAAATCACGTCTATCACCAT

upper sequence: Vv16s0022g01460.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S409_45V6.1 (Physcomitrella patens), 3'ss of exon 3
-----ctgtcatttccatag--caaatgaagtgccacaggctatttatttcttgacatggaacttctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
| || |||| || | | || ||| | | || | | |||| || | ||||| | | || || | | | |||| |||||||| ||||||||||||||| | ||||| |||||||| ||||| ||| | ||| | | || || || ||||||||||| |||||||| ||
aatcaatttcttttcgatgagtcctttcaaatgcta-ggtctctgtcattctcattcaaaaaagtactgaaattcatatcctttatgcggtgttctct------cagGTACCAACACCTGGGACAGATTTGAGTTGCGTGTGCACAAGCGTGTGATCGATTTGCACAGTCCCTCCGAGGTGGTCAAGCAGATCACTTCCATCACCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351026099|gb|FQ428111.1|FQ428111
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110398120|gb|EC964251.1|EC964251
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110691949|gb|EE070635.1|EE070635
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110415757|gb|EC981689.1|EC981689
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110695117|gb|EE072766.1|EE072766
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110426812|gb|EC993235.1|EC993235
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110696080|gb|EE074833.1|EE074833
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110383786|gb|EC948186.1|EC948186
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110426763|gb|EC993183.1|EC993183
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|37189652|gb|CF609001.1|CF609001
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110373898|gb|EC938333.1|EC938333
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|87586841|gb|DY474952.1|DY474952
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110385247|gb|EC949753.1|EC949753
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110702767|gb|EE079036.1|EE079036
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110696474|gb|EE072622.1|EE072622
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110402824|gb|EC963553.1|EC963553
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110705642|gb|EE082728.1|EE082728
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110415521|gb|EC981434.1|EC981434
EST:     GCCCCCCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|22012555|gb|BQ797589.1|BQ797589
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|352791065|gb|FQ477392.1|FQ477392
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCCGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|51989929|gb|CV179384.1|CV179384
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110394498|gb|EC959597.1|EC959597
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|30330069|gb|CD013331.1|CD013331
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|37187502|gb|CF606855.1|CF606855
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|71869410|gb|DT018465.1|DT018465
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110700544|gb|EE078708.1|EE078708
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110423542|gb|EC989889.1|EC989889
EST:     CCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: CCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110702321|gb|EE080901.1|EE080901
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110705996|gb|EE083482.1|EE083482
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110695411|gb|EE073396.1|EE073396
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110379252|gb|EC944435.1|EC944435
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110408507|gb|EC974143.1|EC974143
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110424915|gb|EC991290.1|EC991290
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110692469|gb|EE071747.1|EE071747
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|351026582|gb|FQ432480.1|FQ432480
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110422793|gb|EC989124.1|EC989124
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110378294|gb|EC943418.1|EC943418
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|352795335|gb|FQ476450.1|FQ476450
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110695591|gb|EE073784.1|EE073784
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110370284|gb|EC929300.1|EC929300
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|30329082|gb|CD012344.1|CD012344
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|27582618|gb|CB005313.1|CB005313
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110728891|gb|EE104866.1|EE104866
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110697544|gb|EE074635.1|EE074635
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110695114|gb|EE072763.1|EE072763
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110706667|gb|EE082393.1|EE082393
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110395097|gb|EC960649.1|EC960649
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110694971|gb|EE072452.1|EE072452
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110399255|gb|EC965752.1|EC965752
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110388159|gb|EC952878.1|EC952878
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110696051|gb|EE074772.1|EE074772
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|83277489|gb|DV941497.1|DV941497
EST:     GCCTACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110417579|gb|EC983648.1|EC983648
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110387552|gb|EC952230.1|EC952230
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
EST: gi|110688054|gb|EE066166.1|EE066166
EST:     GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAG                         GAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG
genomic: GCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGgtattgattt ... tgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacatggaacttctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT
                                    ctcacttttt  CT-rich tract
 aattctaaatcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgtcatttccatagcaaatgaagtgccacaggctatttatttcttgacatggaacttctcccaattctaaatcattgtggctcactttttgattcacagGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - catttcc
- - - - - - - - aaatgaa
- - - - - - - - - - - - - -cacaggc
- - - - - - - - - - - - - - - - - - - - - - - - catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcact