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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttctaacatttgttaaatattttaattttttggccttattgttttctttcttggttggtttatacaatggacctaaagtagtggctaatttttcctcagaattgcttgactagGTTTTTGTTCACCCATTGAGTGGGAAAGGAAGTGGCTGTAGAACTTGGCAAACTGTGGCTCCTATATTTTCACATGCTAAAGTGAAAACAAAG

Basic information

species Vitis vinifera
transcript Vv16s0013g01750.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0013g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G47530.1 (Glycine max), 3'ss of exon 2
gtgtgttctaacatttgttaaatattttaattttttggccttattgttttctttcttggttggtttatacaatggacctaaagtagtggctaatttttcctcagaattgcttgactagGTTTTTGTTCACCCATTGAGTGGGAAAGGAAGTGGCTGTAGAACTTGGCAAACTGTGGCTCCTATATTTTCACATGCTAAAGTGAAAACAAAG
|| || ||||  ||| || ||| ||||  | ||||     ||| |      ||| ||| ||| || |   |||| || |     ||    |||||| |          | || |||||||||||||||| |||  |||||||||||| | ||| |||||||| ||| || |||||||||||||||| || | ||||||||| |||||||||
gtatgctctactattggtcaaacatttataattttgcattttact------tttattgattgattaa---aatgaacttttcccagata-taatttct----------gattcactagGTTTTTGTTCATCCAAGGAGTGGGAAAGGTAATGGGTGTAGAACCTGGGAAGCTGTGGCTCCTATATTCTCTCGTGCTAAAGTTAAAACAAAG

upper sequence: Vv16s0013g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G14280.1 (Glycine max), 3'ss of exon 3
gtgtgttctaacatttgttaaatattttaattttttggccttattgttttctttcttggttggtttatacaatggacctaaagtagtggctaatttttcctcagaattgcttgactagGTTTTTGTTCACCCATTGAGTGGGAAAGGAAGTGGCTGTAGAACTTGGCAAACTGTGGCTCCTATATTTTCACATGCTAAAGTGAAAACAAAG
|| || ||||  ||| || ||| ||||  ||||||   ||||    ||   |||  || ||  || |   |||| || |     ||    |||||| |          | || |||||||||||||||| |||  ||| |||||||| | ||| |||||||| ||| || |||||||||||||||| || | |||||||||  ||||||||
gtatgctctagtattggtcaaacatttatattttt---cctt----ttccttttaatgattaattaa---aatgaacttttcccagata-taatttct----------gattcactagGTTTTTGTTCATCCAAGGAGCGGGAAAGGTAATGGGTGTAGAACCTGGGAAGCTGTGGCTCCTATATTCTCTCGTGCTAAAGTAGAAACAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatacaatggacctaaagtagtggctaatttttcctcagaattgcttgactagGTTTTTGTTCACCCATTGAGTGGGAAAGGAAGTGGCTGTAGAACTTGGCAAACTGTGGCTCCTATATTTTCACATGCTAAAGTGAAAACAAAG
                        ggctaat  putative branch site (score: 3)
                           taattttt  TA-rich tract