1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcaagtatacatcttattaaatgcaatttgtatgttttatatgatgccctggttaatgcttttaaatgtctcgtctcaaagccaaagtatttttgtacagGTATATTTTAACAAAATGTTCTGGTCAAAGCCTTGTTCTTTGGCTTTGGCCCAAGATTCCCCTTTAAGAGTTGAAGAGCCAAAGTATGAGGGTATCCGAC
species | Vitis vinifera |
transcript | Vv16s0013g01540.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGCGGCTGCTGATGATTCCACAGNNNNNNNTTTCTCCAGAAAACCCGAG GTATATTTTAACAAAATGTTCTGGTCAAAGCCTTGTTCTTTGGCTTTGGCCEST: gi|26257759|gb|CA808822.1|CA808822
genomic: CCGCGGCTGCTGATGATTCCACAGAAAAAAATTTCTCCAGAAAACCCGAGgtttgaactt ... ttttgtacagGTATATTTTAACAAAATGTTCTGGTCAAAGCCTTGTTCTTTGGCTTTGGCC
EST: CCGCGGCTGCTGATGATTCCACAGNNNNNNNTTTCTCCAGAAAACCCGAG GTATATTTTAACAAAATGTTCTGGTCAAAGCCTTGTTCTTTGGCTTTGGCC
genomic: CCGCGGCTGCTGATGATTCCACAGAAAAAAATTTCTCCAGAAAACCCGAGgtttgaactt ... ttttgtacagGTATATTTTAACAAAATGTTCTGGTCAAAGCCTTGTTCTTTGGCTTTGGCC
gccctggttaatgcttttaaatgtctcgtctcaaagccaaagtatttttgtacagGTATATTTTAACAAAATGTTCTGGTCAAAGCCTTGTTCTTTGGCTTTGGCCCAAGATTCCCCTTTAAGAGTTGAAGAGCCAAAGTATGAGGGTATCCGAC
ggttaat putative branch site (score: 4)
tattttt putative PPT
ttaatgcttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaagtatacatcttattaaatgcaatttgtatgttttatatgatgccctggttaatgcttttaaatgtctcgtctcaaagccaaagtatttttgtacagGTATATTTTAACAAAATGTTCTGGTCAAAGCCTTGTTCTTTGGCTTTGGCCCAAGATTCCCCTTTAAGAGTTGAAGAGCCAAAGTATGAGGGTATCCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
tcaagta
- - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - tgccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagccaa