Sequence
atgc intronic sequence ATGC exonic sequencegtatgaatttcaactttgaattgaactttgaatcttcgttgttcttctggtttttcccctgtttctgatgaccttctgtatgatttcttatttcttggtgttctcatttctgcagCTGAGAACTCTGAAAGGTGGCCACGCATCAAGGGTGGGCTCCCTGGCTTGGAACAATCACGTCCTTACAACTGGAGGAATGGATGGTAAAATCATAAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0107g00320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G36300.1 (Glycine max), 3'ss of exon 3
gtatgaatttcaactttgaattgaactttga-atcttcgttgttcttctggtttttcccctgtttctgatgaccttctgtatgatttcttatttcttggtgttctcatttctgcagCTGAGAACTCTGAAAGGTGGCCACGCATCAAGGGTGGGCTCCCTGGCTTGGAACAATCACGTCCTTACAACTGGAGGAATGGATGGTAAAATCATAAATA
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----------------tgataagatttttgttattgtaataattgctccaaaaaccatataacaattactttctttttatgcaatctgatgttatggtttgatttgataactgcagCTAAGAACACTGAAGGGTGGACACCAAGCACGAGTGGGTTCACTGTCTTGGAACAATCATATCCTCACAACAGGAGGGATGGATGGTAGGATTGTTAACA
upper sequence: Vv15s0107g00320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G33270.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgaatttcaactttgaattgaactttgaatcttcgttgttcttctggtttttcccctgtttctgatgaccttctgtatgat-ttcttatttcttggtgttct----catttctgcagCTGAGAACTCTGAAAGGTGGCCACGCATCAAGGGTGGGCTCCCTGGCTTGGAACAATCACGTCCTTACAACTGGAGGAATGGATGGTAAAATCATAAATA
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-------------------------------------gtaatta--ctactctctctcttttatgttgagatataatatccggtgttcttagtctcatgtgttttatcatatacttgcagCTGAGAACATTGAAGGGTGGTCACCAGTCACGAGTAGGATCACTGGCATGGAACAATCACATCCTTACTACTGGAGGAATGGATGGACTGATCATCAACA
upper sequence: Vv15s0107g00320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G33260.2 (Arabidopsis thaliana), 3'ss of exon 3
gtatgaatttcaactttgaattgaactttgaatcttcgttgttcttctggtttttcccctgtttctgatgaccttctgtatgat-ttcttatttcttggtgttctc---atttctgcagCTGAGAACTCTGAAAGGTGGCCACGCATCAAGGGTGGGCTCCCTGGCTTGGAACAATCACGTCCTTACAACTGGAGGAATGGATGGTAAAATCATAAATA
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-------------------------------------gtaatta--ctactctctctcttttatgttgagatataatatccggtgttcttagtctgatgtgtttctcatatttctgcagCTGAGAACATTAAAGGGTGGTCACCAGTCAAGAGTAGGATCACTGGCATGGAACAATCATATCCTTACTACTGGAGGAATGGATGGACTGATCATCAACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttctgatgaccttctgtatgatttcttatttcttggtgttctcatttctgcagCTGAGAACTCTGAAAGGTGGCCACGCATCAAGGGTGGGCTCCCTGGCTTGGAACAATCACGTCCTTACAACTGGAGGAATGGATGGTAAAATCATAAATA
ttctgat putative branch site (score: 3)
ttctcatttct putative PPT
tatgatttcttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaatttcaactttgaattgaactttgaatcttcgttgttcttctggtttttcccctgtttctgatgaccttctgtatgatttcttatttcttggtgttctcatttctgcagCTGAGAACTCTGAAAGGTGGCCACGCATCAAGGGTGGGCTCCCTGGCTTGGAACAATCACGTCCTTACAACTGGAGGAATGGATGGTAAAATCATAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA