Sequence
atgc intronic sequence ATGC exonic sequencegtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttctgtttcattcttgtcttggtcaaagGCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTCCGGAATCAGCTAAACAAGGGGCTCTTGCCTCGTGGAATTGATGTTCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G44820.1 (Glycine max), 3'ss of exon 2
gtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttctgtttcat--tcttgtcttggtcaaagGCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTCCGGAATCAGCTAAACAAGGGGCTCTTGCCTCGTGGAATTGATGTTCATT
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----aatcaaatttggtggacaacctaactc---gactatgggataaatcccctttagttccacataaatttt-gaggcctaatttcatgcttttgctatgcctgaagGCGGAAGGAATATTCCGAATTAATGCTGATAATAGCCAAGAAGAATTTGTGCGTGATCAGCTAAACAGAGGTCTGGTACCACTTGGAATCGACGTTCATT
upper sequence: Vv15s0048g02830.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G42090.1 (Glycine max), 3'ss of exon 2
gtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttc-tgtttcattcttgtcttggtcaaagGCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTCCGGAATCAGCTAAACAAGGGGCTCTTGCCTCGTGGAATTGATGTTCATT
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-------gtgggataaataccctttttttttttgggtactgggataaataccctttagttccacataaattttgaggcctaatgtcatggttttgctatgcctgaagGCGGAAGGAATATTCCGAATTAATGCTGATAACAGCCAAGAAGAATTTGTGCGTGATCAGCTAAACAGAGGTCTGGTACCACTTGGAATTGACGTTCATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713125|gb|FC062483.1|FC062483EST: CTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAG GCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTC
genomic: CTATTCTTCTTATGTTGCAAAAGCGTTTGTATTCGCAAGGAGGTCTGCAGgtatgctttt ... ttggtcaaagGCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttacttttaccaaaatttttgagtttctgtttcattcttgtcttggtcaaagGCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTCCGGAATCAGCTAAACAAGGGGCTCTTGCCTCGTGGAATTGATGTTCATT
ttcttac putative branch site (score: 2)
tttctgtttcattctt putative PPT
ttttaccaaaattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcttttatttgtgtgctaaattagtttccaaataatttagttactgcttcttacttttaccaaaatttttgagtttctgtttcattcttgtcttggtcaaagGCAGAAGGAATATTCCGAATAAATGCTGAGAATGGGCAAGAAGAGTATGTCCGGAATCAGCTAAACAAGGGGCTCTTGCCTCGTGGAATTGATGTTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT