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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaagtttgggggtcactagatctattcatcctgatatatctacatagctgacagaaaaatgtaagtggactagttgctactccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG

Basic information

species Vitis vinifera
transcript Vv15s0048g01810.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01810.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G01960.1 (Glycine max), 3'ss of exon 3
gtgagaagtttgggggtcactagatctattcatcctgata--tatctacatagctgacagaaaaatgtaagtggactagttgctactccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG
|||||||  ||     | | |      |   || ||  |   ||  || ||    |       ||  | ||| |||| |||||||    ||| |||||||||| ||||| || ||||| |||| ||||||||||||||| ||  ||||||||  |||||||||| |||||
gtgagaatgtttaacattagtgttgtgagagatactatttactagttatatcatggtggagggaacttgagttgacttgttgctaggagttgtagGTTGGACCGCTACCTACTGGTGGTTCTTTCATCATTATGGAATTCATACAATTTGGTGCATCTAGAGGCTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033360|gb|FQ446592.1|FQ446592
EST:     TTGGTGCTATGTATGAAACCAAATCAATCCGTGTACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: TTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
EST: gi|351044742|gb|FQ448996.1|FQ448996
EST:     TTGGTGCTATGTATGAAACCAAATCAATCCGTGTACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: TTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
EST: gi|351013105|gb|FQ424810.1|FQ424810
EST:     TTGGTGCTATGTATGAAACCAAATCAATCCGTGTACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: TTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
EST: gi|110713565|gb|EE089595.1|EE089595
EST:     TTGGTGCTATGTATGAAACCAAATCAATCCGTGTACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: TTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
EST: gi|71881177|gb|DT030232.1|DT030232
EST:     ACCAAGGCCATTTAAG                         GTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA
genomic: ACCAAGGCCATTTAAGgtgagaagtt ... ctccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatctacatagctgacagaaaaatgtaagtggactagttgctactccttgcagGTTGGACCACTACCAACCGGTGGCTCTTACATCATTATGGAATTTATTGAATTTGGTAGATCTAGAGGCGATCAG
           agctgac  putative branch site (score: 3)
                                          ctactcctt  putative PPT
                    aaaaatgtaa  TA-rich tract