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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttctgtctgttaagatctgttatttgatctctttgtttaatatttataaaatccatgtattattcttggacctatagttgactgtgctccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTTGCTTTTGTCTATCCTGATACAAATGGCCGCTTTGTGCTGAGAGAG

Basic information

species Vitis vinifera
transcript Vv15s0048g01290.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34320559|gb|CF373313.1|CF373313
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|77580933|gb|DV219396.1|DV219396
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|110387106|gb|EC951749.1|EC951749
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|34416260|gb|CF415014.1|CF415014
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|352795349|gb|FQ476464.1|FQ476464
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|110692354|gb|EE071504.1|EE071504
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|110391304|gb|EC956269.1|EC956269
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|34415403|gb|CF414157.1|CF414157
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|83277004|gb|DV941012.1|DV941012
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|77582171|gb|DV220047.1|DV220047
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|71876098|gb|DT025153.1|DT025153
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|34319505|gb|CF372259.1|CF372259
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|32249822|gb|CD715641.1|CD715641
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|27584880|gb|CB007575.1|CB007575
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|71871892|gb|DT020947.1|DT020947
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|110686597|gb|EE064413.1|EE064413
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|351043680|gb|FQ431033.1|FQ431033
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|110406199|gb|EC971762.1|EC971762
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|71871238|gb|DT020293.1|DT020293
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|30330289|gb|CD013551.1|CD013551
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|110686299|gb|EE063779.1|EE063779
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|110384243|gb|EC948668.1|EC948668
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|71872736|gb|DT021791.1|DT021791
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|32265218|gb|CD716807.1|CD716807
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|87585618|gb|DY474262.1|DY474262
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|30329674|gb|CD012936.1|CD012936
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|71870444|gb|DT019499.1|DT019499
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|349826849|gb|FQ418940.1|FQ418940
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|51050834|gb|CO818752.1|CO818752
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|110710456|gb|EE086805.1|EE086805
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
EST: gi|51989993|gb|CV179448.1|CV179448
EST:     TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTG                         GTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT
genomic: TCCAAATTTACACATGGAAGGATGCTACTCTTCGTGAGTTAACTGATCTGgtatgtagct ... ccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataaaatccatgtattattcttggacctatagttgactgtgctccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTTGCTTTTGTCTATCCTGATACAAATGGCCGCTTTGTGCTGAGAGAG
                                agttgac  putative branch site (score: 4)
                                      ctgtgctcctttttt  CT-rich tract
           atgtattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttctgtctgttaagatctgttatttgatctctttgtttaatatttataaaatccatgtattattcttggacctatagttgactgtgctccttttttagGTCAAAGAGGTTGCTCCTGCGGCAAGGAGAAGAGATGCAATACTGTCCTTTGCTTTTGTCTATCCTGATACAAATGGCCGCTTTGTGCTGAGAGAG

- - -tgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - -aaaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactgt