Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacaatctttcattgcttggcatccaaaaattgtaaagatgtaatatgaatgaaatgtctcattgcctttatttatttttatttcctgatttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT

Basic information

species Vitis vinifera
transcript Vv15s0048g00900.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 3'ss of exon 3
cacaatctttcattgcttggcatccaaaa-attgtaaagatgtaata-tgaatg----aaatg-tctcattgcctttattt--atttttatttcctgatt-taattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT
          || |     |  | |||   | || ||| ||| | |  ||||||      ||| || || |     ||| |  ||| ||  | ||   || |  ||  || | || ||||| |||||||| ||   |||||| |||||||| ||||| ||||||||||||||||| || ||||| || || |||||||| |||||| |||
----------cacttggaagtgttcaagctaatgcaaatatgcacttctgaatgttcaggatgctcccagtattgctatctaaattattgctgcccatttgtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAACTGCTCTCCAACACTCTGTACTACAAGCGATTCTTCCCATATTATGCTT

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G124417_T01 (Zea mays), 3'ss of exon 2
cacaatctttcattgcttggcatccaaaaattgtaaagatgtaatat-gaatgaaat-gtctcattgcctttatttatttttat-ttcctgatttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT
  |||| |  | | ||| |        || |        ||| |  | |||  | ||     ||      | || | ||||    ||  | |  | ||  ||||||||| | ||  |  | |||||| ||||||| ||||| |||||||||||||| || || ||||| |||||||| ||  | |||||||| || ||  |||
ggcaatgtagc-tagctagattaatgcaagtaactgttgtgtcaccttgaaccatatcagtacagatttgtgatgtgttttagcatttttcaccttat--cagATCTATGAACACAATAATAACAAGAAGATGAGCTGCCCAGCAATGGCTCAACTTCTGTCAAACACACTCTACTACAAGAGATTCTTCCCATACTACGCTT

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G39420.2 (Glycine max), 3'ss of exon 1
cacaatctttcattgcttggcatccaaaaattgtaaagatgtaatatgaatgaaatgtctcattg---cctttatttatttttatttcctgatt-taattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT
      | |||| |   |  | |     || | ||     | || |  |||| ||   ||   ||   |||||||    | | || |  ||| | | | | ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||  ||||||| ||||| || || || ||||| ||||| ||||||||| |||
tgtgtaccttcagtttctcccttgttttaagtttacgatggcaaaa--aatggaagcccttgctggaacctttat--gatgtcatcttttgactctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTT

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G60820.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------cacaatc-tttcattgcttggcatccaaaaattgtaaagatgtaatatgaatgaaatgtctcattgcctttatttatttttatttcctgatttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT
                || ||| ||   ||  | | ||    | | |    |  || |||| |||||    |   |     | ||| | | | | |  || |||  || ||||||||||| |||||||| |||||||||||||| || ||||||||||| || || ||||||||||| || || |  || || || ||||| || ||| | |
gtgagttaaactttggtcgtttgatcaattatctttcatccttcgcagtattagaaaatga-tgaaagacttgtgtaagagtgttt-tctctgtgtt-tggtttcctt-cagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAGCTTCTCTCCAACACGCTTTATTTCAAGCGGTTTTTCCCCTACTATGCCT

upper sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
-cacaatctttcattgcttg-gcatccaaaaattgtaaagatgtaatatgaatgaaatgtctcattgcctttatttatttttatttcctgatttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT
  |||   |     | || | |  |      |||       ||||   | | |   |    | |      | |   |||    || | | || ||  |  |||| |||||||| ||||| |||||||||||||| || || || ||||| |||||||| || || || || ||||| || || ||||| || |||||  | |
gtacagaatccagatactcgcgtgttggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcatt----ttccttcatgta--tgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408415|gb|CF214042.1|CF214042
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110701338|gb|EE078798.1|EE078798
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110406409|gb|EC971980.1|EC971980
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110367163|gb|EC931089.1|EC931089
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110686517|gb|EE064245.1|EE064245
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110731955|gb|EE106817.1|EE106817
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|351056417|gb|FQ454278.1|FQ454278
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|351040709|gb|FQ438253.1|FQ438253
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|161712237|gb|FC061611.1|FC061611
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|351016321|gb|FQ446181.1|FQ446181
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|30133256|gb|CB918595.1|CB918595
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|22008081|gb|BQ793115.1|BQ793115
EST:     TTCAAGCTGATGTAAGAGC-TTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATTTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110708375|gb|EE085848.1|EE085848
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|22011829|gb|BQ796863.1|BQ796863
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110690363|gb|EE067399.1|EE067399
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|71867003|gb|DT016058.1|DT016058
EST:     ACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCAC-ACAAAGCAGATGAGTTGCCNTGCAATGGCTCA
genomic: ACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAAC-AAGCAGATGAGTTGCCCTGCAATGGCTCA
EST: gi|110722612|gb|EE098996.1|EE098996
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110688266|gb|EE066618.1|EE066618
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110687257|gb|EE064508.1|EE064508
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110705826|gb|EE083120.1|EE083120
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|30132002|gb|CB917341.1|CB917341
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|161705647|gb|FC056192.1|FC056192
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|29784216|gb|CB344664.2|CB344664
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110701457|gb|EE079053.1|EE079053
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110695795|gb|EE074220.1|EE074220
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110379243|gb|EC944426.1|EC944426
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110420310|gb|EC986580.1|EC986580
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|22011827|gb|BQ796861.1|BQ796861
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|28965578|gb|CB344611.1|CB344611
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110428717|gb|EC995196.1|EC995196
EST:     AGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: AGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110385775|gb|EC950328.1|EC950328
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110701052|gb|EE078242.1|EE078242
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110707254|gb|EE083492.1|EE083492
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110420910|gb|EC987197.1|EC987197
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110689903|gb|EE066533.1|EE066533
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110686704|gb|EE064648.1|EE064648
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|30131372|gb|CB916711.1|CB916711
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|30135723|gb|CB921061.1|CB921061
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110690981|gb|EE068563.1|EE068563
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|351031033|gb|FQ444860.1|FQ444860
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110701108|gb|EE078347.1|EE078347
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|34415837|gb|CF414591.1|CF414591
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110688122|gb|EE066314.1|EE066314
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|33408674|gb|CF214301.1|CF214301
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110401204|gb|EC967806.1|EC967806
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110398016|gb|EC964077.1|EC964077
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|351018518|gb|FQ424625.1|FQ424625
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
EST: gi|110722795|gb|EE099369.1|EE099369
EST:     TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTG                         ATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA
genomic: TTCAAGCTGATGTAAGAGCTTTACAGAAGCACTTGGCAGCTAGGCACTTGgtgaggtttc ... ttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaatgaaatgtctcattgcctttatttatttttatttcctgatttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT
                      tttatttatttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacaatctttcattgcttggcatccaaaaattgtaaagatgtaatatgaatgaaatgtctcattgcctttatttatttttatttcctgatttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT

cacaatc
- - - - - cattgct
- - - - - - - - - -gcatcca
- - - - - - - - - - - - - aaaattg
- - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctca