Sequence
atgc intronic sequence ATGC exonic sequence...ttgctcttttatgtttcattttccaagaattaaccttgcaatgactatcctaagcatttctcaacgatgactaatgagttttctctgacttcttctgcagCTTGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G38690.2 (Glycine max), 3'ss of exon 4
ttgctcttttatgtttcattttccaag--aattaaccttgcaatgactatcctaagcatttctcaacgatgactaatgagttttctctgacttcttctgcagCTTGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAAT
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ctctattactgaataaaaatatcaaaagtattttagtgtgtgatggatttttgaagt-ttccttggtagtgtctcacaa-ttttttggctttttttatgtagTTGGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAAT
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G31740.1 (Glycine max), 3'ss of exon 4
ttgctctt-ttatgtttcattttccaagaattaaccttgcaatgactatcctaagcatttctcaacgatgactaatgagttttctctgacttcttctgcagCTTGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAAT
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taaatctaactttaactctattacagaataaaaatattgaagtatttttttttaagtttctttggttgtgtctcacaa-ttttttggctttttttatgtagTTGGATCTGGAGAAAGGGATGATGGACTGCTTATATGCTAAAT
upper sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G41500.1 (Glycine max), 3'ss of exon 2
ttgctcttttatgtttcattttccaagaattaaccttgcaatgactatcctaagca--tttctcaacgatgactaatgagttttctctgacttcttc-tgcagCTTGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAAT
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--agtttgtgatgaatctaattaaatctgtatgggttgca-tcattgtcttatgaagcttctttgtttgttcctcacccaattctttggatttgttcatgtagTTGGATTTGGAGAAAGGAATGATGGACTGCTTATATGCAAAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatcctaagcatttctcaacgatgactaatgagttttctctgacttcttctgcagCTTGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAAT
ttttctctgacttctt CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgctcttttatgtttcattttccaagaattaaccttgcaatgactatcctaagcatttctcaacgatgactaatgagttttctctgacttcttctgcagCTTGATCTGGAGAAAGGGATGATGGACTGCTTATATGCAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - ccaagaa
- - - - - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttc