Sequence
atgc intronic sequence ATGC exonic sequencegtgagaagcgtttatggctttcttcttagcttgttttttttctcttttattatattaatacagtcgtgattgatacagGAAGAGAAGTTGGAGCCTTTGAAAAACATAACTGATGATCCACGGATCCGACTTCTGAATCGGCTGTATGCGAGGAAGAGGAAAGAATTAAAAGAGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G39480.1 (Glycine max), 3'ss of exon 4
gtgagaagcgtttatgg-----ctttcttcttagcttgttttttttc-tcttttattatattaatacagtcgtgat--tgatacagGAAGAGAAGTTGGAGCCTTTGAAAAACATAACTGATGATCCACGGATCCGACTTCTGAATCGGCTGTATGCGAGGAAGAGGAAAGAATTAAAAGAGAGAG
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gtgtctggtgcttgtgagaactctgtatgccaattatgtcttcgttcatcttcaattctcttttttcacacatgcttttgatccagGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAAAAGAGGAAAGAACTAAAAGAGCGTG
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G46780.1 (Glycine max), 3'ss of exon 3
gtgagaagcgtttatgg-----ctttcttcttagcttgttttttttc-tcttttattatattaatacagtcgtgattgata--cagGAAGAGAAGTTGGAGCCTTTGAAAAACATAACTGATGATCCACGGATCCGACTTCTGAATCGGCTGTATGCGAGGAAGAGGAAAGAATTAAAAGAGAGAG
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gtgtctggtgcttgtgagaactctgtatgctaattatgtctttgttcatcttcaattctcttttttcacacatgctttttatccagGAAGAGAAGTTGGAGCCCTTGAAAAACACAACTGATGACCCAAGGATCAGGCTTTTGAATAGATTGTATGCCAAAAAGAGGAAAGAACTAAGAGAGCGTG
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G07600.1 (Glycine max), 3'ss of exon 4
-------------gtgagaagcgtttatggctttcttcttagcttgttttttttctcttttattatattaatacagtcgtgattgatacagGAAGAGAAGTTGGAGCCTTTGAAAAACATAACTGATGATCCACGGATCCGACTTCTGAATCGGCTGTATGCGAGGAAGAGGAAAGAATTAAAAGAGAGAG
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gtgtctggtgcttgtgagaactctgtatgccaattatatctttttggattttctattttcattt---ctcacgcattctt--ttgatccagGAAGAAAAGTTGGAGCCCTTGAGAAATATAACTGCCGACCCAAGGATCAGACTTTTGAACCGTTTGTATGCCAAAAAGAGAAAAGAACTAAAAGAGCGCG
upper sequence: Vv15s0046g02450.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G01090.2 (Glycine max), 3'ss of exon 3
-------------gtgagaagcgtttatggctttcttcttagcttgttttttttctcttttattatattaatacagtcgtgattgatacagGAAGAGAAGTTGGAGCCTTTGAAAAACATAACTGATGATCCACGGATCCGACTTCTGAATCGGCTGTATGCGAGGAAGAGGAAAGAATTAAAAGAGAGAG
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gtgtctggtgcttgtgagaactctgtatgccaattatatctttttggattttctattttcattt---ctcacgcattctt--ttgatccagGAAGAAAAGTTGGAGCCCTTGAGAAATATAACGGCTGACCCAAGGATCAGGCTTTTGAACCGTTTGTATGCCAAAAAGAGAAAAGAACTAAAAGAGCGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttagcttgttttttttctcttttattatattaatacagtcgtgattgatacagGAAGAGAAGTTGGAGCCTTTGAAAAACATAACTGATGATCCACGGATCCGACTTCTGAATCGGCTGTATGCGAGGAAGAGGAAAGAATTAAAAGAGAGAG
ttgttttttttctctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagaagcgtttatggctttcttcttagcttgttttttttctcttttattatattaatacagtcgtgattgatacagGAAGAGAAGTTGGAGCCTTTGAAAAACATAACTGATGATCCACGGATCCGACTTCTGAATCGGCTGTATGCGAGGAAGAGGAAAGAATTAAAAGAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA