Sequence
atgc intronic sequence ATGC exonic sequence...atgaaaaaaaaaaaaaaggaaaagaaaagaaaaatgatgtatatattcaatatcaaaattttgtttttttactcattctatgatttctgttattatgcagATTCTGGAAGGCGATTTGGTAACCAGTCTCGTAGGTCTTGGCAAACTCCTGAACATGACGGACTTCTTGGGAGTGGTTCTTTTCCAAGACCTTCTGGATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g02270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G39120.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------------atgaaaaaaaaaaaaaaggaaaagaaaagaaaaatgatgtatatattcaatatcaaaattttgtttttttactcattctatgatttctgttattatgcagATTCTGGAAGGCGATTTGGTAACCAGTCTCGTAGGTCTTGGCAAACTCCTGAACATGACGGACTTCTTGGGAGTGGTTCTTTTCCAAGACCTTCTGGATA
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gtttttacacttgatcagcaagaatatgcctgtccttaattctctacaaattaaactgtttggactgatatggcattcttccctatatctatgacttagtgatgggtattgaagtagaagtttctttgaaaagggttattttc--atctatttcattgtttgtgtctatttgcagATTCTGGAAAACGTTTTGGCAATCAATTGCGTAGATCTTGGCAAGGTCCTGAGCATGATGGGCTTCTTGGTAGTGGTTCTTTTCCTCGGCCCTCTGGGTA
upper sequence: Vv15s0046g02270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G47220.1 (Glycine max), 3'ss of exon 3
---------------------------------------------------------------------------atgaaaaaaaaaaaaaaggaaaagaaaagaaaaatgatgtatatattcaatatcaaaattttgtttttttactcattctatgatttctgttattatgcagATTCTGGAAGGCGATTTGGTAACCAGTCTCGTAGGTCTTGGCAAACTCCTGAACATGACGGACTTCTTGGGAGTGGTTCTTTTCCAAGACCTTCTGGATA
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gtttttacacttgatcagcaagaatattcctgtccttaattctctacaaattaaactgtttggattgagatggcattcttctatatatctatgacttagtgatgggtgttgaagtagaagtttctttaaaaagggttattttg--atctatttcat--tttgtgtctatttgcagATTTTGGAAAACGTTTTGGCAATCAATCGCGTAGATCTTGGCAAGGTCCTGAGCATGATGGGCTTCTAGGTAGTGGTTCTTTTCCTCGACCCTCTGGGTA
upper sequence: Vv15s0046g02270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G01290.2 (Arabidopsis thaliana), 3'ss of exon 3
atgaaaaaaaaaaaaaaggaaaagaaaagaaaaatgatgtatatattcaatatcaaaattt---tgtttttttactcattctatgatttctgttat-tatgcagATTCTGGAAGGCGATTTGGTAACCAGTCTCGTAGGTCTTGGCAAACTCCTGAACATGACGGACTTCTTGGGAGTGGTTCTTTTCCAAGACCTTCTGGATA
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---aagtctgcttgtctagtgaacatgaaaagaa-ggtcttttcgaaaaattctggaatttgggtgtattatagttgatttggaactgtgtattttgttaggagAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTTGGGAAAGGTTCTTTCCCTAAGCCTTCTGGATT
upper sequence: Vv15s0046g02270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G01290.1 (Arabidopsis thaliana), 3'ss of exon 3
atgaaaaaaaaaaaaaaggaaaagaaaagaaaaatgatgtatatattcaatatcaaaattt---tgtttttttactcattctatgatttctgttat-tatgcagATTCTGGAAGGCGATTTGGTAACCAGTCTCGTAGGTCTTGGCAAACTCCTGAACATGACGGACTTCTTGGGAGTGGTTCTTTTCCAAGACCTTCTGGATA
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atgaagtctgcttgtctagtgaacatgaaaagaa-ggtcttttcgaaaaattctggaatttgggtgtattatagttgatttggaactgtgtattttgttagGAGAGCCTGGAAGGCGTTCTGGTATGCCATCTCGGAGGTCTTGGCAAGCACCTGAGCATGATGGACTTCTTGGGAAAGGTTCTTTCCCTAAGCCTTCTGG--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaatatcaaaattttgtttttttactcattctatgatttctgttattatgcagATTCTGGAAGGCGATTTGGTAACCAGTCTCGTAGGTCTTGGCAAACTCCTGAACATGACGGACTTCTTGGGAGTGGTTCTTTTCCAAGACCTTCTGGATA
tttctgtt CT-rich tract
tatcaaaattttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgaaaaaaaaaaaaaaggaaaagaaaagaaaaatgatgtatatattcaatatcaaaattttgtttttttactcattctatgatttctgttattatgcagATTCTGGAAGGCGATTTGGTAACCAGTCTCGTAGGTCTTGGCAAACTCCTGAACATGACGGACTTCTTGGGAGTGGTTCTTTTCCAAGACCTTCTGGATA
- -aaaaaaa
- - - - - - - - - -aaaagaa
- - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -atcaaaa