Sequence
atgc intronic sequence ATGC exonic sequencegtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G44420.2 (Glycine max), 3'ss of exon 4
-------------------gtaagacattat--------ttgctttctactaatggattttttttttt-----ttttttgtgttgatctccaaaagggag-ctcaacaaatctgtttcttatgtcgggctt--aataatttttgcaaaaactttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA
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gtaagacaatccattgtttgtaaaccattttaatcaactttgacttttcccacttgctttccgtttctcatgcttttacaggaaaatttacagaagctaatctggactaatctgtttttttcttctgttttttaatacatattcaaacaaattttgt--agGTACAAAATTTAATAGAAAGGTGCCTACAATTATATATGAATAAAGATGAAGTGGTCAAAACACTCTTCGCTCGGGCAAAGATAGATCCTGGATTTACAA
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G06230.2 (Glycine max), 3'ss of exon 3
------------------------------------------------gtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagg-gagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA
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gtaaggatatatattctttgctaaacctttgactagttttctgttattgcctacttttacgtgcacatcctatatcgtgtggattgtattttatagggatgatttttggaagctaatctgatctaatctgttttttttgcctttttgattaaatattctaa-----cttttgtagGTTCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAAGTGGTTAAAACACTACTGACTCGGGCAAAGATAGATCCTGGATTCACAA
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G02860.2 (Glycine max), 3'ss of exon 3
-----------------------------------------------------------------------gtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA
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gtaaggatatgtattctttgctaaacatttgactagttttctgttattgcctacttttccacttgcatcctatgtcatgtggattgtattttataaaaggataatttgtgcctttcaaaaaaataaataaataaataaa---agaatataaggataatttgtggaagctaatcttcttttttcctcctttt-tgtagGTCCAGAATTTAATAGAAAGATGCCTACAGTTATATATGAATAAAGATGAAGTGGTTAAAACATTACTGACTCGGGCAAAGATAGATCCTGGATTCACAA
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G61700.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------gtaagacattatttgc---tttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcc-----tccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA
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gtaagaaacaaatttgagctccttcttgtcatttttaactattaaaaagtaggtttcatcgctctctccctatctaagtgtaaatatgttgtgtcc-tccctcgtatatgtgtaacatgtgatgataaacacttttgaatgatgtagGTTCAAAATTTGATAGAAAGATGTCTTCAGTTGTACATGAACAGAGATGAGGTCGTGAAGACTCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAA
upper sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G46420.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA
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----------------------gtaa-gaacactttgccaccttcctatctttat-------agactttcttgtaagt---ttccaatcatctgataaaaaaacatattctaaatgactgatgcagGTCCAAAATTTGATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGTAAAGACACTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110703971|gb|EE081373.1|EE081373EST: AGATATTGAACTT GTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAA
genomic: AGATATTGAACTTgtaagacatt ... tttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA
gcttaat putative branch site (score: 4)
ctttcctcc putative PPT
ttaataatttttgcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagacattatttgctttctactaatggatttttttttttttttttgtgttgatctccaaaagggagctcaacaaatctgtttcttatgtcgggcttaataatttttgcaaaaactttcctccagGTCCAGAATTTGATAGAACGGTGCCTACAGTTGTACATGAACAGGGATGAAGTGGTGAAGACCCTCTTGAGTCGTGCAAGGATAGATCCTGGATTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA