1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...acaatgaaaatatgattcaatgaagcctagaggcatgcttttgatgcatttattttttgtttgtcatgcaattcaatggcttctgtttaaatctcttcagTTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAATACAAAGGACTTGTTGAAGTCTGTCATTTTCTCCCAGTATGTGCCGAGAC
species | Vitis vinifera |
transcript | Vv15s0046g00980.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCCACCTACTTCATTATCGATATTCTCTCAATCCTTCCCCTCCCACAG TTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAATEST: gi|161707349|gb|FC055173.1|FC055173
genomic: TGTCCACCTACTTCATTATCGATATTCTCTCAATCCTTCCCCTCCCACAGgtatgtggtg ... atctcttcagTTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAAT
EST: TGTCCACCTACTTCATTATCGATATTCTCTCAATCCTTCCCCTCCCACAG TTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAAT
genomic: TGTCCACCTACTTCATTATCGATATTCTCTCAATCCTTCCCCTCCCACAGgtatgtggtg ... atctcttcagTTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAAT
gcatttattttttgtttgtcatgcaattcaatggcttctgtttaaatctcttcagTTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAATACAAAGGACTTGTTGAAGTCTGTCATTTTCTCCCAGTATGTGCCGAGAC
tctcttc CT-rich tract
tattttttgtttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatgaaaatatgattcaatgaagcctagaggcatgcttttgatgcatttattttttgtttgtcatgcaattcaatggcttctgtttaaatctcttcagTTGGTTATTCTGATCGTCAAAGCTGAAGTGAAAGGACCGGTTTCATTGAATACAAAGGACTTGTTGAAGTCTGTCATTTTCTCCCAGTATGTGCCGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -gaaaata
- - - - - - - - - - tgaagcc
- - - - - - - - - - - - - - - - gcatgct
- - - - - - - - - - - - - - - - - - - - -tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggct