1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttgattccttgtgtacccattaatatggctgagatatcatactgaacttttccatctgaggaccaacatgttaattgcatgatctttgagtgcatttagATTGAAGAAGAAGAACGGAAACTGGAAGCAGCTATTGAAGAAACTGAGAAACAGTGTGCCCAAGTAAATGCTGAAATGAAGGAATTAGAGTTAAAATCTA
species | Vitis vinifera |
transcript | Vv15s0046g00950.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCACGAGATGTTCTTAGTGAAGCTGATTTTCTCAAGGAGAAATTAAAG ATTGAAGAAGAAGAACGGAAACTGGAAGCAGCTATTGAAGAAACTGAGAAAEST: gi|110708620|gb|EE086373.1|EE086373
genomic: AGGCACGAGATGTTCTTAGTGAAGCTGATTTTCTCAAGGAGAAATTAAAGgtgcttatct ... gtgcatttagATTGAAGAAGAAGAACGGAAACTGGAAGCAGCTATTGAAGAAACTGAGAAA
EST: AGGCACGAGATGTTCTTAGTGAAGCTGATTTTCTCAAGGAGAAATTAAAG ATTGAAGAAGAAGAAACGGAA-CTGGAAACAGCTATTGAAGAAACTGAAAAEST: gi|34548484|gb|CF516716.1|CF516716
genomic: AGGCACGAGATGTTCTTAGTGAAGCTGATTTTCTCAAGGAGAAATTAAAGgtgcttatct ... gtgcatttagATTGAAGAAGAAGAA-CGGAAACTGGAAGCAGCTATTGAAGAAACTGAGAA
EST: AGGCACGAGATGTTCTTAGTGAAGCTGATTTTCTCAAGGAGAAATTAAAG ATTGAAGAAGAAGAACGGAAACTGGAAGCAGCTATTGAAGAAACTGAGAAA
genomic: AGGCACGAGATGTTCTTAGTGAAGCTGATTTTCTCAAGGAGAAATTAAAGgtgcttatct ... gtgcatttagATTGAAGAAGAAGAACGGAAACTGGAAGCAGCTATTGAAGAAACTGAGAAA
aacttttccatctgaggaccaacatgttaattgcatgatctttgagtgcatttagATTGAAGAAGAAGAACGGAAACTGGAAGCAGCTATTGAAGAAACTGAGAAACAGTGTGCCCAAGTAAATGCTGAAATGAAGGAATTAGAGTTAAAATCTA
tgttaat putative branch site (score: 3)
atgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgattccttgtgtacccattaatatggctgagatatcatactgaacttttccatctgaggaccaacatgttaattgcatgatctttgagtgcatttagATTGAAGAAGAAGAACGGAAACTGGAAGCAGCTATTGAAGAAACTGAGAAACAGTGTGCCCAAGTAAATGCTGAAATGAAGGAATTAGAGTTAAAATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -ttccttg
- - - - - - - -acccatt
- - - - - - - - - - - - - tggctga
- - - - - - - - - - - - - - - - - - - catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatc