Sequence
atgc intronic sequence ATGC exonic sequence...aatctgcggacatgagttgtggatgattatttgatgttattgtatttaactcaaatttatcaatatatttatatattgaaaaaaatgaatatttgggcagGGAATATCAACGGACAGGATAATAGATGTTCGTCGGCTCTTATCCGTGAACACGATAACTTGCAACATCACCAATTTTTCGTTATCCCATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G06160.1 (Glycine max), 3'ss of exon 1
--------aatctgcggacatgagttgtggatgattatttgatgttattgtatttaactcaaatttatcaatatatttatatattgaaaaaaatgaatatttgggcagGGAATATCAACGGACAGGATAATAGATGTTCGTCGGCTCTTATCCGTGAACACGATAACTTGCAACATCACCAATTTTTCGTTATCCCATGAG
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tatttatttatttccatttccaagttctagctctcacgattttattattgttttttattcacataaaatggtttatttatttat-----attttaaattttgaagCAGGGAATATCAACGGACAGAATTATAGATGTTCGTCGGCTTTTATCGGTGAATACGGAGACGTGTTATATCACAAATTTTTCCCTGTCGCATGAG
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G02770.1 (Glycine max), 3'ss of exon 3
---aatctgcggacatgagttgtggatgattatttgatgttattgtatttaactcaaatttatcaatatatttatatattgaaaaaaatgaatatttgggcagGGAATATCAACGGACAGGATAATAGATGTTCGTCGGCTCTTATCCGTGAACACGATAACTTGCAACATCACCAATTTTTCGTTATCCCATGAG
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tccaagttctagctctcacgactttattattgttttttattcacataaattgatgcaaaatgcaaatttaaatggtttatttattttataaattttgaagCAGGGAATATCAACGGACAGAATTATAGATGTTCGTCGTCTTCTATCGGTGAATACGGAGACGTGTTATATCACAAATTTTTCCCTGTCGCATGAG
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 3'ss of exon 3
---aatctgcggacatgagttgtggatgattatttgatgtt-attgtatttaactcaaatttatcaatatatttatatattgaaaaaaatgaatatttgggcagGGAATATCAACGGACAGGATAATAGATGTTCGTCGGCTCTTATCCGTGAACACGATAACTTGCAACATCACCAATTTTTCGTTATCCCATGAG
| | | | | ||| | || | | ||||| ||| | || ||| ||||||| | | || | | | |||||| | ||||| ||||||||||||||||| ||||||||||| ||||| ||||| || ||| || ||| || ||||||||| |||| | |||||||||
gatttttttttgccgtatgttaggtataggtttcatatgtttattattccaaaaataaaattatcaaaa-gtggattttatagagaaaatgtctg---aaacagGGCATATCAACGGACAGGATCATAGATGTTCGGCGGCTGTTATCGGTTAACTTCGACACCTGCCACGTCACCAATTATTCGCTCTCCCATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaactcaaatttatcaatatatttatatattgaaaaaaatgaatatttgggcagGGAATATCAACGGACAGGATAATAGATGTTCGTCGGCTCTTATCCGTGAACACGATAACTTGCAACATCACCAATTTTTCGTTATCCCATGAG
atttaac putative branch site (score: 3)
aaatttatcaatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatctgcggacatgagttgtggatgattatttgatgttattgtatttaactcaaatttatcaatatatttatatattgaaaaaaatgaatatttgggcagGGAATATCAACGGACAGGATAATAGATGTTCGTCGGCTCTTATCCGTGAACACGATAACTTGCAACATCACCAATTTTTCGTTATCCCATGAG
- - - - - catgagt
- - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - -aactcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa