1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtggtagccgtgaatctctttctgtgtgtctcacaggtgttttttttttatcaaaacaaagcgtgaaaaatgatttgcattttttttttctgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGGTGTCGCCGCCGCGGATGACGTTGGATTGCTTCCGGCAAAGGCCGTACCA
species | Vitis vinifera |
transcript | Vv15s0021g02300.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTA GGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGGEST: gi|71872919|gb|DT021974.1|DT021974
genomic: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTAgtacgtggta ... tgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
EST: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTA GGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGGEST: gi|110419768|gb|EC986017.1|EC986017
genomic: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTAgtacgtggta ... tgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
EST: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTA GGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
genomic: CCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTAgtacgtggta ... tgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGG
ttttatcaaaacaaagcgtgaaaaatgatttgcattttttttttctgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGGTGTCGCCGCCGCGGATGACGTTGGATTGCTTCCGGCAAAGGCCGTACCA
tttgcatttttttttt CT-rich tract
aaaaatgatttgcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtggtagccgtgaatctctttctgtgtgtctcacaggtgttttttttttatcaaaacaaagcgtgaaaaatgatttgcattttttttttctgggttgtagGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGGTGTCGCCGCCGCGGATGACGTTGGATTGCTTCCGGCAAAGGCCGTACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG