Sequence
atgc intronic sequence ATGC exonic sequence...ttttttcttcttcctcaaaaatggaggttcttctctttactttgtgtatagatggatgggcaagcaattgacaacttgagattgttattacaatttgcagGTACTTGTATAGAGGATTGTCTACTGGAGATCGTCCCACATGCGACCAATGCCTGAGGATTCATGAAAAGCTGACAGAGAGAGCTGGTTTAGGCTGCATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g01870.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G14260.1 (Glycine max), 3'ss of exon 3
ttttttcttcttcctcaaaaatggaggttcttctctttactttgtgtatagatgg-atgggcaagcaattgacaacttgagattgttattacaatttgcagGTACTTGTATAGAGGATTGTCTACTGGAGATCGTCCCACATGCGACCAATGCCTGAGGATTCATGAAAAGCTGACAGAGAGAGCTGGTTTAGGCTGCATA
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-catcaaatgagtctttttatttaacaacattatagttactatagtaactaatggtattcttacaccattttctgtcctaaaaggttgttatttgccatagGTACTTGTATAGAGGATTAGCTACAGGAGATCGTCCCACGTGTGACCAATGTCTTCGGATTCATGAAAAGTTGACAGAGAAAGCAGGACTAGGTTGCATC
upper sequence: Vv15s0021g01870.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G26690.1 (Glycine max), 3'ss of exon 3
---ttttttcttcttcctcaaaaatggaggttcttctctttactttgtgtatagatggatgggcaagcaattgacaacttgagattgttattacaatttgcagGTACTTGTATAGAGGATTGTCTACTGGAGATCGTCCCACATGCGACCAATGCCTGAGGATTCATGAAAAGCTGACAGAGAGAGCTGGTTTAGGCTGCATA
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gagttttctttttaaatattatagtaactatagtagtagataactaatg-gtat-tctttacaccttcattttctgtcctaagag-atttttatttgtcatagGTACTTGTATAGAGGCTTAGCTACCGGAGATCGCCCGACCTGTGACCAATGTCTTCTGATTCATGAAAAATTGACAGAGAAAGCAGGACTAGGTTGCATC
upper sequence: Vv15s0021g01870.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G01710.1 (Arabidopsis thaliana), 3'ss of exon 3
----------------ttttttcttcttcctcaaaaatggaggttcttctctttactttgtgtatagatggatgggcaagcaattgacaactt----gagattgttattac----aatttgcagGTACTTGTATAGAGGATTGTCTACTGGAGATCGTCCCACATGCGACCAATGCCTGAGGATTCATGAAAAGCTGACAGAGAGAGCTGGTTTAGGCTGCATA
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gtaagtgcaaagttggttttttttttttttgctgtaatgcgttttgtaatatgtatgaattggaaagctctatcctcaggctgtctgtgctctttgatagaatgtttttgcttaaaattctcagGTACTTGTACAGAGGACTTTCTACTGGGGACCGACCCACCTGCGATCAGTGCCTGAAGATTCACGAGAAACTCACTGAGAGAGCTGGTCTCGGTTGCATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatagatggatgggcaagcaattgacaacttgagattgttattacaatttgcagGTACTTGTATAGAGGATTGTCTACTGGAGATCGTCCCACATGCGACCAATGCCTGAGGATTCATGAAAAGCTGACAGAGAGAGCTGGTTTAGGCTGCATA
aattgac putative branch site (score: 3)
attgttattacaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttttcttcttcctcaaaaatggaggttcttctctttactttgtgtatagatggatgggcaagcaattgacaacttgagattgttattacaatttgcagGTACTTGTATAGAGGATTGTCTACTGGAGATCGTCCCACATGCGACCAATGCCTGAGGATTCATGAAAAGCTGACAGAGAGAGCTGGTTTAGGCTGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - -cttcctc
- - - - - - - - aaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaagca