Sequence
atgc intronic sequence ATGC exonic sequence...ggtagaggctcttgaaaaccctttttataatttgacgtatgggtcacaatgattcatagattgcactttatttagtgacattatttcttaactttgacagGTTTTAATTAACAACATTGAGGAATATGCACCTATAGTTTATACTCCAACTGTTGGGCTTGTTTGCCAAAACTATAGTGGTTTATTCAGAAGACCAAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g00500.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os07g31380.1 (Oryza sativa), 3'ss of exon 3
ggtagaggctct--tgaaaaccctttttataatttgacgtatgggtcacaatgattcatagattgcactttatttagtgacattatttcttaactttgacagGTTTTAATTAACAACATTGAGGAATATGCACCTATAGTTTATACTCCAACTGTTGGGCTTGTTTGCCAAAACTATAGTGGTTTATTCAGAAGACCAAGGG
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-gtttctactataatctcaattgttgttaactttagcaggctgaggtgtgccttttcaaagtggttacctgatttccatatttt-tttcatctttttaatagGTCTTAATAGATAATATTGAGGAACATGCACCTATTGTTTACACGCCGACTGTTGGACTTGTTTGTCAAAACTATAGTGGTTTATTTAGACGGCCTCGGG
upper sequence: Vv15s0021g00500.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G406672_T02 (Zea mays), 3'ss of exon 3
ggtagaggctcttgaaaaccctttttataatttgacgtat--gggtcacaatgattcatagattgcactttatttagtgacattatttcttaactttgacagGTTTTAATTAACAACATTGAGGAATATGCACCTATAGTTTATACTCCAACTGTTGGGCTTGTTTGCCAAAACTATAGTGGTTTATTCAGAAGACCAAGGG
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-gttaactttgtttcccttgcaatatcaaacataactgattgagaacttgttgaattctgtttcgaaaatgattgccttgtattgtctcatt-tttcaatagGTACTAATAGATAACATTGAGGAGTATGCACCTATCGTTTACACACCAACCGTTGGACTTGTTTGCCAAAACTACAGTGGTCTGTTTCGACGCCCTAGGG
upper sequence: Vv15s0021g00500.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G24630.1 (Glycine max), 3'ss of exon 3
--ggtagaggctcttgaaaaccctttttataatttgacgtatgggtcacaatgattcatagattgcactttatttagtgacattatttcttaactttgacagGTTTTAATTAACAACATTGAGGAATATGCACCTATAGTTTATACTCCAACTGTTGGGCTTGTTTGCCAAAACTATAGTGGTTTATTCAGAAGACCAAGGG
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attgaagatgttcttgtgcatcttccaaatcccgtttcccccccaccccgtccccccaaaagaatgatgttattttg-aatgacatgtcttatatttt-cagGTTTTGATTGCCAAAATAGAGGAATATGCACCAATAGTGTATACTCCAACAGTGGGTCTTGTATGTCAGAACTATAGTGGACTGTTTAGAAGACCAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaatgattcatagattgcactttatttagtgacattatttcttaactttgacagGTTTTAATTAACAACATTGAGGAATATGCACCTATAGTTTATACTCCAACTGTTGGGCTTGTTTGCCAAAACTATAGTGGTTTATTCAGAAGACCAAGGG
tcttaac putative branch site (score: 2)
attatttcttaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtagaggctcttgaaaaccctttttataatttgacgtatgggtcacaatgattcatagattgcactttatttagtgacattatttcttaactttgacagGTTTTAATTAACAACATTGAGGAATATGCACCTATAGTTTATACTCCAACTGTTGGGCTTGTTTGCCAAAACTATAGTGGTTTATTCAGAAGACCAAGGG
- - - - - - -gaaaacc
- - - - - - - - - - - - - - - - - - - - - - cacaatg