1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtggtttgttcttctctgatcagtcaaattttcttgttttgtttaaattcttagtgctgtcaacttctttgtagagtcaattttcaaattttatttgttgatgttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCATGGTTATCAGCTGCAGTTTGTGTGATCATAGCTTTGCCAAACCATTCTT
species | Vitis vinifera |
transcript | Vv14s0219g00120.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGTCATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTCTGCTGCAEST: gi|351045861|gb|FQ441046.1|FQ441046
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAGGGTTTCAAAGATTTCCATTGGAATTGTTTCTGCTGCAEST: gi|351030795|gb|FQ438633.1|FQ438633
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAGGGTTTCAAAGATTTCCATTGGAATTGTTTCTGCTGCAEST: gi|349811028|gb|FQ406016.1|FQ406016
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAAGTGCAATCTATGAG CGTGGAACTCAGAGGGTTTCAAAGATTTCCATTGGAATTGTTTCTGCTGCAEST: gi|110699274|gb|EE076127.1|EE076127
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCAEST: gi|294966259|gb|GW837510.1|GW837510
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCAEST: gi|349820300|gb|FQ403916.1|FQ403916
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAGGGTTTCAAAGATTTCCATTGGAATTGTTTCTGCTGCAEST: gi|349809992|gb|FQ398617.1|FQ398617
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAGGGTTTCAAAGATTTCCATTGGAATTGTTTCTGCTGCAEST: gi|110696243|gb|EE075180.1|EE075180
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTCTGCTGCAEST: gi|110724366|gb|EE100141.1|EE100141
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCAEST: gi|34549515|gb|CF517747.1|CF517747
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
EST: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAG CGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTCTGCTGCA
genomic: ATGCTGTTATCTTGACAGCATTTACTTTGTTTCAAATTGCAATCTATGAGgtaagtggtt ... ttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCA
gtcaacttctttgtagagtcaattttcaaattttatttgttgatgttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCATGGTTATCAGCTGCAGTTTGTGTGATCATAGCTTTGCCAAACCATTCTT
tgttgat putative branch site (score: 4)
tgtttttt CT-rich tract
aattttcaaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggtttgttcttctctgatcagtcaaattttcttgttttgtttaaattcttagtgctgtcaacttctttgtagagtcaattttcaaattttatttgttgatgttttttgcagCGTGGAACTCAGAAGGTTTCAAAGATTTCCATTGGAATTGTTTGTGCTGCATGGTTATCAGCTGCAGTTTGTGTGATCATAGCTTTGCCAAACCATTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG