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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatcttaattctctatcctgatcactattagctatgctagcctttttccagaatgatcttccaactaggcactcttggtcttacttgctgaacatgattgtcattttcaaactgcagGCGCCTATTAATGGGGCATCAAAGCATCCTTCAGCAACCCCTTCCTCAGAAAATAGAAG

Basic information

species Vitis vinifera
transcript Vv14s0219g00090.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408246|gb|CF213873.1|CF213873
EST:     TTTCTAAAGCATCTAAGGATTGCTCCACTCCTCTGAGAACTCCAACTAGG                         GCGCCTATTAATGGGGCATCAAAGCATCCTT
genomic: TTTCTAAGGCATCTAAGGATTGCTCCACTCCTCTGAGAACTCCAACTAGGgtgaatctta ... caaactgcagGCGCCTATTAATGGGGCATCAAAGCATCCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactaggcactcttggtcttacttgctgaacatgattgtcattttcaaactgcagGCGCCTATTAATGGGGCATCAAAGCATCCTTCAGCAACCCCTTCCTCAGAAAATAGAAG
               gtcttac  putative branch site (score: 3)
                                      tcattttc  putative PPT
                                        attttcaaa  TA-rich tract