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...ttttgtggggtgaggtagaggaaagggagggaatgttcattcaatggccagcatttacatcatttaatgaaactgattgacatttgaataatgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAAATTTTTGCAACTG
species | Vitis vinifera |
transcript | Vv14s0171g00490.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGG ATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAAEST: gi|110686452|gb|EE064108.1|EE064108
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGG ATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAAEST: gi|161717585|gb|FC065623.1|FC065623
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGTATACGTGG ATACCTTATCAACAAGGATGCTACATCTGAGCATTCAGAAGAAGTATCTAAEST: gi|294965944|gb|GW839283.1|GW839283
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGG ATGCCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAAEST: gi|37190597|gb|CF609946.1|CF609946
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGG ATACCTTATCAACAAGGATGCTACATCTGAGCATTCAGAAGAAGTATCTAAEST: gi|110364929|gb|EC928538.1|EC928538
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGTATACGTGG ATACCTTATCAACAAGGATGCTACATCTGAGCATTCAGAAGAAGTATCTAAEST: gi|30128024|gb|CB913363.1|CB913363
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGG ATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAAEST: gi|161719304|gb|FC068268.1|FC068268
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGTATACGTGG ATACCTTATCAACAAGGATGCTACATCTGAGCATTCAGAAGAAGTATCTAAEST: gi|110372969|gb|EC937167.1|EC937167
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
EST: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGTATACGTGG ATACCTTATCAACAAGGATGCTACATCTGAGCATTCAGAAGAAGTATCTAA
genomic: TATGCAAGGACCAAGATATCAGATGACGAGTTGAGAAATCGCATACGTGGgtgagatttc ... atgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAA
ggccagcatttacatcatttaatgaaactgattgacatttgaataatgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAAATTTTTGCAACTG
gattgac putative branch site (score: 3)
atttacatcatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtggggtgaggtagaggaaagggagggaatgttcattcaatggccagcatttacatcatttaatgaaactgattgacatttgaataatgtctgcagATACCTTATCAACAAGGATGCTACATCCGAGCATTCAGAAGAAGTATCTAAATTTTTGCAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -tgtgggg
- - - - - - - - agaggaa
- - - - - - - - - - - - gggaggg
- - - - - - - - - - - - - - - - - - -cattcaa
- - - - - - - - - - - - - - - - - - - - - - - - cagcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg