Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctattctttatgcttattggagagattcacattttgttcatttgtattaggttgagatggtagcattttcaacttcaacctgtttatggtgcaacctggtgtctctgtataaggggcattcttatgtattttgttgaatacatgtatgtttctctgtagATGCTTTTGACACTGAACAACTTCTAGAGTGCATTGGAAAGCTCAAATCTGGGCAATCTGTCCATGTACCAATATATGATTTTAAGAATCATCGTCGATG

Basic information

species Vitis vinifera
transcript Vv14s0171g00090.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83274960|gb|DV939056.1|DV939056
EST:     GACTGCTGAAGAATCAGAACGTGTACATGAGTATAATTTTGATCATCCTG                         ATGCTTTTGACACTGAACAACTTCTAGAGTGCATTGGAAAGCTCAAATCTG
genomic: GACTGCTGAAGAATCAGAACGTGTACATGAGTATAATTTTGATCATCCTGgtatatctat ... ttctctgtagATGCTTTTGACACTGAACAACTTCTAGAGTGCATTGGAAAGCTCAAATCTG
EST: gi|46917774|gb|CN547103.1|CN547103
EST:     GACTGCTGAAGAATCAGAACGTGTACATGAGTATAATTTTGATCATCCTG                         ATGCTTTTGACACTGAACAACTTCTAGAGTGCATTGGAAAGCTCAAATCTG
genomic: GACTGCTGAAGAATCAGAACGTGTACATGAGTATAATTTTGATCATCCTGgtatatctat ... ttctctgtagATGCTTTTGACACTGAACAACTTCTAGAGTGCATTGGAAAGCTCAAATCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtataaggggcattcttatgtattttgttgaatacatgtatgtttctctgtagATGCTTTTGACACTGAACAACTTCTAGAGTGCATTGGAAAGCTCAAATCTGGGCAATCTGTCCATGTACCAATATATGATTTTAAGAATCATCGTCGATG
                                          tgtttctct  CT-rich tract
             attcttatgtatttt  TA-rich tract