Sequence
atgc intronic sequence ATGC exonic sequencegtgagtatgatcttctacctttttcttattctgatattttccagacaaaatgaatgaaattgagtagaaaatgggtaataatgtttgacaaagtaaactgactatacttatcagggttccaattacattcgttgttttcgttatgcagAGGTATTTGGGTATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G42340.1 (Glycine max), 3'ss of exon 3
gtgagtatgatcttctacctttttcttattctgatattttccagacaaaatgaatgaaattgagtagaaaatgggtaataatgtttgacaaagtaaactgactatacttatcagggttccaattacattcgttg--ttttcgttatgcagAGGTATTTGGGTATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTT
|||||| | || || | | | || | || | || | | | || | | | | | |||| | || |||| |||||||||| ||||| || ||||| ||| | |||||| | |||| |||||||||||||||||||| |||||||| |||||||| ||||| |||
-----------------------------------------------------------gtgagtatgatattt-tattggtctaagatactccaagtcaatta-gttcacccggactatctcttgactgaatagttttttatgctgtagAGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCTT
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 3
gtgagtatgatcttctacctttttcttattctgatattttccagacaaaatgaatgaaattgagtagaaaatgggtaataatgtttgacaaagtaaactgactatacttatcagggttccaattacattcgttg--ttttcgttatgcagAGGTATTTGGGTATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTT
|||||| | || || | | || | || | | || | | | || | | | | | |||| | || || | |||||||||| ||||| || ||||| ||| | |||||| | |||| |||||||||||||||||||| |||||||| |||||||| ||||| | |
-----------------------------------------------------------gtgagtattatatac-tattggtcaaagatacttcaagccaatta-gttcacctggactatctcttgactgaatagttttttatgctgtagCGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCAT
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G54960.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtatgatcttctacctttttcttattctgatattttccagacaaaatgaatgaaattgagtagaaaatgggtaataatgtttgacaaagtaaactgactatacttatcagggttccaattacattcgttgttttcgttatgc---agAGGTATTTGGGTATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTT
| | | ||| || | || |||| | | | || | | || || || || || | | || ||| || |||| |||||||||| || ||||| || || || |||||||| ||| | |||||||||||||||||||| || || ||||| |||| |||||||||| | |
---------------------------------------------------gtaagcaataacgttattgttttgttgcaatgctgattgattcagtgtgtttgtgttttct----tttttataacttttgcattctttgtttggccttagAGATATTTGGGTACGGTGAGGGAAGATGAAACTTTGAATATCTTGCTTGAATTTGTTCCTGGTGGATCTATATCTTCACTCTTGGAGAAATTTGGAGCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaactgactatacttatcagggttccaattacattcgttgttttcgttatgcagAGGTATTTGGGTATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTT
aactgac putative branch site (score: 2)
ttgttttc putative PPT
tatacttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtatgatcttctacctttttcttattctgatattttccagacaaaatgaatgaaattgagtagaaaatgggtaataatgtttgacaaagtaaactgactatacttatcagggttccaattacattcgttgttttcgttatgcagAGGTATTTGGGTATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA