1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctaccccccttgctgtgttcaagtttttgtttgcattgttgctaacttgtgtttttctaatcactcactgatcaaaccttgcttccgatttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGTATGTATTTCAGAGACCTTCTTCCAAGACTAGTCAAGGAAGGAGATGATG
species | Vitis vinifera |
transcript | Vv14s0108g01330.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG GTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGTEST: gi|351041739|gb|FQ455949.1|FQ455949
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
EST: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG GTACTGCATCCTGGTTTAGATTTGATCAATATTAATGAGCAAATATGGAGTEST: gi|161715858|gb|FC065189.1|FC065189
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
EST: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG GTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGTEST: gi|351026402|gb|FQ428414.1|FQ428414
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
EST: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG GTACTGCATCCTGGTTCGGATTTGATCAATATTAATGAGCAAATATGGAGTEST: gi|351040113|gb|FQ425199.1|FQ425199
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
EST: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAG GTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
genomic: TCCCAGTTGAGTTGCCTGAACCAATGTTGCCACCTTTACAGTACCCAAAGgtatgatata ... ttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGT
acttgtgtttttctaatcactcactgatcaaaccttgcttccgatttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGTATGTATTTCAGAGACCTTCTTCCAAGACTAGTCAAGGAAGGAGATGATG
tttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaccccccttgctgtgttcaagtttttgtttgcattgttgctaacttgtgtttttctaatcactcactgatcaaaccttgcttccgatttgcaaatagGTACTGCATCCTGGTTCAGATTTGATCAATATTAATGAGCAAATATGGAGTATGTATTTCAGAGACCTTCTTCCAAGACTAGTCAAGGAAGGAGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - cccccct
- - - - - - - tgtgttc
- - - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcac