Sequence
atgc intronic sequence ATGC exonic sequencegtttacactccattctaatacttttttgttggtagaacccatttgatccaatttttaatgaggtccttctctctctctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGTACAGTTATGTTGCTGGCATTGGTTCCACCTGGTGGGCATATGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G49660.1 (Glycine max), 3'ss of exon 3
--------gtttacactccatt--ctaatacttttttgttggtagaacccatttgatccaatt-tttaatgaggtcc-ttctctctctctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGTACAGTTATGTTGCTGGCATTGGTTCCACCTGGTGGGCATATGGTG
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gtttgtgtgttttgattttgttatttactattaacttgt-aatgtgttttaagtgtggtggtcatttgatgaggtttgttgtcattattaaccccagTATATTGGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGCGTAGTCCTATTTATGGCACTGGTTCCAGCTGGTGGACATCTTGTG
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G37020.3 (Glycine max), 3'ss of exon 3
--------gtttacactccattctaatacttttttgttggtagaacccatttgatccaatt-tttaatgaggtccttctctctctctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGTACAGTTATGTTGCTGGCATTGGTTCCACCTGGTGGGCATATGGTG
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gttcgtgtgttttgattttgttattttaattatcttgtaatgtgttttaggtgttggggtcatttgatgaggtttgt-tgtcattatttaccagTGCATTGGAGGGGGCCGAATCAACTGTGATAATGGCGTCTGGGATGTGTGCTAGCGTAGTCCTGTTTATGGCACTGGTTCCAGCTGGTGGACATCTTGTG
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G01120.1 (Arabidopsis thaliana), 3'ss of exon 3
----------------------gtttacactccattctaatacttttttgttggtagaacccatttgatccaatttttaatgaggtccttctctctctctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGTACAGTTATGTTGCTGGCATTGGTTCCACCTGGTGGGCATATGGTG
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gttattattattttatctttaataatgtgttttataattgcacttgcctttcctgaagattatgttgttgatgcttttggatttgtttgattaatatattgctgtagTGCACTTGAAGGGGCTGAATCAACTTTGGTTATGGCATCTGGGATGTGTGCAAGCACTGTTATGCTTTTGGCATTGGTTCCTGCTGGTGGACACATTGTC
upper sequence: Vv14s0108g01110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G33320.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttacactccattctaatacttttttgttggtagaacccatttgatccaatttttaatgaggtccttctctctctctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGTACAGTTATGTTGCTGGCATTGGTTCCACCTGGTGGGCATATGGTG
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gtatatctttc-tcttgatg--tctttgtttactgtctctctatatcatgagttttg-taagttgttccattttat---gctcagTGTACTTGAAGGGGCTGAATCAACTTTGGTAATGGCATCGGGGATGTATGCAAGTAATGTTATGCTTTTGGCTTTGGTTCCTACAAATGGACATATTGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714535|gb|FC062985.1|FC062985EST: TATGGGCGTTATGGAAATCCAACAACGGTGGTTCTGGAGGAGAAGATAAG TGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGC
genomic: TATGGGCGTTATGGAAATCCAACAACGGTGGTTCTGGAGGAGAAGATAAGgtttacactc ... tctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtagaacccatttgatccaatttttaatgaggtccttctctctctctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGTACAGTTATGTTGCTGGCATTGGTTCCACCTGGTGGGCATATGGTG
ttttaat putative branch site (score: 3)
tccttctctctctct putative PPT
atccaatttttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttacactccattctaatacttttttgttggtagaacccatttgatccaatttttaatgaggtccttctctctctctggaacagTGCACTTGAGGGGGCTGAATCAACTGTGATAATGGCATCTGGAATGTGTGCTAGTACAGTTATGTTGCTGGCATTGGTTCCACCTGGTGGGCATATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG