1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtacctgaaactatttcttttaattcggtgttaacattctcattgcatgttagtgtttctatgtgcaagttttaatttctgaatctcatttcatgtgaagAAAGCTGCAACTGAAAGAGAGGCATTTATTGCTGTTAAGGCCCAGTCAGGTGATTTGGCTTTGGATCCTCCAGTGGTTTCAGTCCCAGCACCCCATACCA
species | Vitis vinifera |
transcript | Vv14s0108g00150.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAGACCCTACTTTTTGGGAAGAAATCGTCCAAATCTAATTTTTCNNNN NNNGCTGCAACTGAAAGAGAGGCATTTATTGCTGTTAAGGCCCAGTCAGGTEST: gi|161707466|gb|FC057368.1|FC057368
genomic: TCAAGACCCTACTTTTTGGGAAGAAATCGTCCAAATCTAATTTTTCAAAAgtaagaaact ... tcatgtgaagAAAGCTGCAACTGAAAGAGAGGCATTTATTGCTGTTAAGGCCCAGTCAGGT
EST: TCAAGACCCTACTTTTTGGGAAGAAATCGTCCAAATCTAATTTTTCNNNN NNNGCTGCAACTGAAAGAGAGGCATTTATTGCTGTTAAGGCCCAGTCAGGT
genomic: TCAAGACCCTACTTTTTGGGAAGAAATCGTCCAAATCTAATTTTTCAAAAgtaagaaact ... tcatgtgaagAAAGCTGCAACTGAAAGAGAGGCATTTATTGCTGTTAAGGCCCAGTCAGGT
catgttagtgtttctatgtgcaagttttaatttctgaatctcatttcatgtgaagAAAGCTGCAACTGAAAGAGAGGCATTTATTGCTGTTAAGGCCCAGTCAGGTGATTTGGCTTTGGATCCTCCAGTGGTTTCAGTCCCAGCACCCCATACCA
ttttaat putative branch site (score: 3)
tctcatttc putative PPT
ttttaatttctgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctgaaactatttcttttaattcggtgttaacattctcattgcatgttagtgtttctatgtgcaagttttaatttctgaatctcatttcatgtgaagAAAGCTGCAACTGAAAGAGAGGCATTTATTGCTGTTAAGGCCCAGTCAGGTGATTTGGCTTTGGATCCTCCAGTGGTTTCAGTCCCAGCACCCCATACCA
- - - gaaacta
- - - - - - - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcaag