Sequence
atgc intronic sequence ATGC exonic sequencegtatggtgccttctcactggatttttttctcctttctattgttaggttgtgtgagggggtttacttctattatatttgacattttagttagcatcaaatggagtattttggttaaggtgactgtgatcatctttatacagGTGTGGTTTCTTAGGCTTACTTCACATGGATGTTTTCCATCAGCGGCTTGAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G39400.1 (Glycine max), 3'ss of exon 4
gtatggtgccttctcactggatttttttctcctttctattgttaggttg-tgtga-gggggtttacttctattatat-ttgacattttagttagcatcaaatggagtattttggttaaggtgactgtgatcatctttatacagGTGTGGTTTCTTAGGCTTACTTCACATGGATGTTTTCCATCAGCGGCTTGAACAG
||| | |||||| || || | | | ||| |||| | | | |||| | || ||| ||| | || || ||| || | | || || || ||||||||| || |||||| | || |||||||||||||| ||||| ||||||||||||
--------------------------gtctggtatctattactaaaagaatgaaatgagaatttggttctgtgaaaaattgaaacatt---tagtttcatcttgaataattta-------tgtttctaattatgttctctcagGTGTGGGTTTTTAGGCCTTCTGCACATGGATGTTTTTCATCAACGGCTTGAACAG
upper sequence: Vv14s0108g00130.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G46900.1 (Glycine max), 3'ss of exon 3
gtatggtgccttctcactggatttttttctcctttctattgttaggttg-tgtga-gggggtttacttctattatat-ttgacattttagttagcatcaaatggagtattttggttaaggtgactgtgatcatctttatacagGTGTGGTTTCTTAGGCTTACTTCACATGGATGTTTTCCATCAGCGGCTTGAACAG
||| | |||||| || || | | | |||| |||| | | | |||| | || |||| ||| |||| || ||| || | | || || || | ||||||||| || |||||| | || |||||||||||||| ||||| ||||||||||||
--------------------------gtctggtatctattactaaaagaatgaaacgagagtttggttctgtaaaaaattgaaacatt---tagcttcatctggaataattta-------tgtttctaattatgttcactcagGTGTGGGTTTTTAGGCCTTCTGCACATGGATGTTTTTCATCAACGGCTTGAACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttagcatcaaatggagtattttggttaaggtgactgtgatcatctttatacagGTGTGGTTTCTTAGGCTTACTTCACATGGATGTTTTCCATCAGCGGCTTGAACAG
tcatcttt CT-rich tract
atctttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggtgccttctcactggatttttttctcctttctattgttaggttgtgtgagggggtttacttctattatatttgacattttagttagcatcaaatggagtattttggttaaggtgactgtgatcatctttatacagGTGTGGTTTCTTAGGCTTACTTCACATGGATGTTTTCCATCAGCGGCTTGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA