1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcagaacttgtctctcttaattttagtattgtccgattcggttttttttatttgctcgaattaaagacttccttttcacatcgggtgtttgttattgcagTCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTACTGCTCCTTGCAACAGCTCCATCCTGTACCCGGCTGATGGGGGAAATAT
species | Vitis vinifera |
transcript | Vv14s0108g00090.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCCCCTGCAATCCCTGCAATCCATCTTCAAATGCCAATCCTTCACAAA TCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTAEST: gi|30124717|gb|CB910056.1|CB910056
genomic: TT----C--C---CCCTGCAATCCATCTGCAAATGCCAATCCTTCACAAAgtaagttttc ... gttattgcagTCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTA
EST: TTCCCCCTGCAATCCCTGCAATCCATCTTCAAATGCCAATCCTTCACAAA TCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTAEST: gi|30136184|gb|CB921522.1|CB921522
genomic: TT----C--C---CCCTGCAATCCATCTGCAAATGCCAATCCTTCACAAAgtaagttttc ... gttattgcagTCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTA
EST: TTCCCCCTGCAATCCCTGCAATCCATCTTCAAATGCCAATCCTTCACAAA TCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTA
genomic: TT----C--C---CCCTGCAATCCATCTGCAAATGCCAATCCTTCACAAAgtaagttttc ... gttattgcagTCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTA
ttttatttgctcgaattaaagacttccttttcacatcgggtgtttgttattgcagTCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTACTGCTCCTTGCAACAGCTCCATCCTGTACCCGGCTGATGGGGGAAATAT
aattaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagaacttgtctctcttaattttagtattgtccgattcggttttttttatttgctcgaattaaagacttccttttcacatcgggtgtttgttattgcagTCCAGCACCCCGGTGTTCAGTTGGCCAAGGTTAAGGTTGATGCTGATTTTACTGCTCCTTGCAACAGCTCCATCCTGTACCCGGCTGATGGGGGAAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - tctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgtt