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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagtggtatggttgaattgtttcttatttgattttatttttattcttaaaattaaattacaattgttttattcattaagttatgtttgatgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG

Basic information

species Vitis vinifera
transcript Vv14s0108g00010.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G49070.1 (Glycine max), 3'ss of exon 3
acagtggtatggttgaattgtttct-tatttgattttatttttattcttaaaattaaattacaattgttttattcat-taagttatgtttgatgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG
  |||  | || ||  ||  |   | || ||   | ||||  ||   || | |||    ||  | | ||| | | || | |||||    |  ||  |  ||||| ||    ||  | || ||  |||||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||| |||
-tagtaatttgattttatcttaaatatactttgatctattcataacttttatattc--ctatgactatttcactaatgttagttaatgcttgtgcattccagcTCTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G37570.1 (Glycine max), 3'ss of exon 3
acagtggtatggttgaattgtttcttatttgattttattt-----ttattcttaaaattaaattacaattgttttattcattaagttatgtttgatgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG
   |  || |  |    |  | | | || |  |||| | |     | | | ||| | |   || || |||    || |  |||  | ||| |||   |||| ||||| ||    ||  | || ||  |||||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||| |||
---ggtgtttcctcatgtcttctttaatgtctttttgtctacaaatgacttttatattcctatgaccatttcactaat-gttagttaatgcttgtgcattc-cagCTCTTCACAACTATCACTGTTAATGAACCTGCTCCTGGTCTGAAGGCTATTTTTAGCTTCAAAGTTCCTGACCAAAGGTCTGGAAAG

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G02380.1 (Glycine max), 3'ss of exon 3
acagtggtatggt-tgaattgtttcttatttgattttatttttattcttaaaattaaattacaattgttttattcat-taagttatgtttgatgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG
    ||  |   | | ||||   | |||| |  ||| ||||  |       | ||  ||| ||    ||| | | |  |   | |||  |    | || ||||||||    ||  | || ||  |||| ||||||||||| || ||| |||| |||| ||||| ||||||||| ||||||||||| |||
ttcttgccactatgtcaatttgcttttatgttctttaatttacacagaccta-ttctattgcatgaatttcactaaagttgataatgcatttgcactc-cagCTTTTCACAACTATCACTGTCAATGAGCCTGCTCCTGGTCTCAAGACTATTTTTAGCTTTAGAGTTCCTGATCAAAGGTCTGGAAAG

upper sequence: Vv14s0108g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G05130.1 (Glycine max), 3'ss of exon 3
acagtggtatggttgaattgtttcttatttgattttatttttattcttaaaa------ttaaattacaattgttttattcat-taagttatgtttgatgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG
      |  |  |  || | | ||  ||||| |||||| |||| | |  | |      ||  ||| ||   |||| | | |  |   | |||  |    | || |||||| |    ||  | || ||  |||| ||||||||||| || ||| |||| |||| ||| | ||||||||| ||||||||||| |||
-----tgcttcttgcaactatgtca-atttgcttttatctttaatttacacaggcctattctattgcatgagtttcactaaagttgataatgcatttgcactc-cagCTTCTCACAACTATCACTGTCAATGAGCCTGCTCCTGGTCTCAAGACTATTTTTAGCTTCAGAGTTCCTGATCAAAGGTCTGGAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584194|gb|DV221153.1|DV221153
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71856250|gb|DT005305.1|DT005305
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71854808|gb|DT003863.1|DT003863
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|294966303|gb|GW837554.1|GW837554
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110702383|gb|EE081035.1|EE081035
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71877395|gb|DT026450.1|DT026450
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|77584446|gb|DV221292.1|DV221292
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110685633|gb|EE062525.1|EE062525
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110380238|gb|EC945486.1|EC945486
EST:     GACACTAGCTCCAAT                         CTTTTTGTGACCG-TACCGTGGGATGAACCTGCTCCTGGCCTGAAGTCTAT
genomic: GACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGT-GGATGAACCTGCTCCTGGCCTGAAGTCTAT
EST: gi|161708366|gb|FC057042.1|FC057042
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71854973|gb|DT004028.1|DT004028
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110694680|gb|EE071996.1|EE071996
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71855582|gb|DT004637.1|DT004637
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110703939|gb|EE081313.1|EE081313
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71874996|gb|DT024051.1|DT024051
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71865784|gb|DT014839.1|DT014839
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|161715473|gb|FC069049.1|FC069049
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|77588481|gb|DV223453.1|DV223453
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|352781706|gb|FQ469004.1|FQ469004
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71856067|gb|DT005122.1|DT005122
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110693440|gb|EE069671.1|EE069671
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACTGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110691473|gb|EE069615.1|EE069615
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACTGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71875650|gb|DT024705.1|DT024705
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|352782173|gb|FQ470075.1|FQ470075
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71875894|gb|DT024949.1|DT024949
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71859244|gb|DT008299.1|DT008299
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71855463|gb|DT004518.1|DT004518
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGG
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGG
EST: gi|71859018|gb|DT008073.1|DT008073
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110693844|gb|EE070431.1|EE070431
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACTGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71876956|gb|DT026011.1|DT026011
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71857546|gb|DT006601.1|DT006601
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71856209|gb|DT005264.1|DT005264
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|32268425|gb|CD717584.1|CD717584
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACTGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110701982|gb|EE080178.1|EE080178
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|161710352|gb|FC058989.1|FC058989
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|71858139|gb|DT007194.1|DT007194
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|110376066|gb|EC941106.1|EC941106
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|77583183|gb|DV220629.1|DV220629
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
EST: gi|37184727|gb|CF604081.1|CF604081
EST:     TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAAT                         CTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC
genomic: TGAAGAACAAGAACATCACAACTGATGTCAAAATTGACACTAGCTCCAATgtgagttcca ... tgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaaattaaattacaattgttttattcattaagttatgtttgatgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG
                                       gtttgat  putative branch site (score: 5)
                                                ttctc  putative PPT
     aattaaattacaattg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acagtggtatggttgaattgtttcttatttgattttatttttattcttaaaattaaattacaattgttttattcattaagttatgtttgatgattctcagCTTTTTGTGACCGTTACCGTGGATGAACCTGCTCCTGGCCTGAAGTCTATCTTTAACTTTAAAGTTCCTGACCAAAGGTCTGGCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - -tggttga
- - - - - - - - - - - - - - - - - - - - - - - - -aaattaa