1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgattaagtaccttagttgtggcttttttgaattctgcttctgaaatttctgagttggataattgttttcattcaattacggagatatcttatgcaacaacctgactttattcatgaaatatttgaccctgaatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAGCTTGAACGTCAACTTGAGACATCCTTGAAGCAAGTCAGGTCTACTAAG
species | Vitis vinifera |
transcript | Vv14s0083g01050.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAACGAACTCAGAG AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAEST: gi|33405261|gb|CF210888.1|CF210888
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: GAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAACGAACTCAGAG AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAEST: gi|33402901|gb|CF208528.1|CF208528
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: GAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAACGAACTCAGAG AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAEST: gi|110370316|gb|EC929381.1|EC929381
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAEST: gi|110379750|gb|EC944969.1|EC944969
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: CTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAEST: gi|110710966|gb|EE087623.1|EE087623
genomic: CTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: GAGTACTTGAAACTGAAATCTAAGTTTGAGGCCCTTCAACGAACTCAGAG AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAEST: gi|110398751|gb|EC965225.1|EC965225
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
EST: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAG AAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
genomic: GAGTACCTGAAACTGAAATCTAAGTTTGAGTCCCTTCAACGAACTCAGAGgtgattaagt ... aatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCA
atcttatgcaacaacctgactttattcatgaaatatttgaccctgaatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAGCTTGAACGTCAACTTGAGACATCCTTGAAGCAAGTCAGGTCTACTAAG
tttattcatgaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattaagtaccttagttgtggcttttttgaattctgcttctgaaatttctgagttggataattgttttcattcaattacggagatatcttatgcaacaacctgactttattcatgaaatatttgaccctgaatattctagAAACCTTCTTGGGGAAGACTTGGGTCCATTGAACACAAAAGAGCTTGAGCAGCTTGAACGTCAACTTGAGACATCCTTGAAGCAAGTCAGGTCTACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG