Sequence
atgc intronic sequence ATGC exonic sequence...attttgtggcacattttgctacttatgtttattgcattctactcagatttatctctgtggagttgtttaattgatatcaagccaatgttcactcctgcagAAAGCACATGTTCAGCAATTTGTAGCTACTGAAGATGCACTCAATAAAGCAGCAGAAGCTAGAAATTTGTGTCAAAAGCTTATAAAACGTCTACAAGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G50960.1 (Glycine max), 3'ss of exon 3
attttgtggcacattttgctacttatgtttattgcattctactcagatttatctctgtggagttgtttaattgatatcaagccaatgttcactcctgcagAAAGCACATGTTCAGCAATTTGTAGCTACTGAAGATGCACTCAATAAAGCAGCAGAAGCTAGAAATTTGTGTCAAAAGCTTATAAAACGTCTACAAGGAA
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-------------ggtctttattcatccttaa-actgcatattttgttgt-cataagaggagttattgaactggtgccgtatctctgttcac------aGAAAGCTCATGTTCAACAATTTTTGGCTACTGAAGATGCACTAAACAAAGCTGCAGAAGCAAGGGACATGTGTGAAAAACTTATGAAACGTTTGCATGGA-
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G27740.1 (Glycine max), 3'ss of exon 3
attttgtggcacattttgctacttatgtttattgcattctactcagatttatctctgtggagttgtttaattgatatcaagccaatgttcactcctgcagAAAGCACATGTTCAGCAATTTGTAGCTACTGAAGATGCACTCAATAAAGCAGCAGAAGCTAGAAATTTGTGTCAAAAGCTTATAAAACGTCTACAAGGAA
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------------gtcttgattcatcattaaactgcatattttgttgtcataa----gaggagttattgaactggtgctgtatctctgttcac------agAAAGCTCATGTTCAACAATTTTTGGCTACTGAAGATGCACTAAACAAGGCTGCAGAAGCAAGGGATATGTGTGAAAAACTTATGAAACGTTTGCATGGAG
upper sequence: Vv14s0083g00990.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G38880.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------------------------------------------------------------------attttgtgg-cacattttgctacttatgtttattgcattctactcagatttatctctgtggagttgtttaattgatatcaagccaatgttcactcctgcagAAAGCACATGTTCAGCAATTTGTAGCTACTGAAGATGCACTCAATAAAGCAGCAGAAGCTAGAAATTTGTGTCAAAAGCTTATAAAACGTCTACAAGGAA
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gttgctttctatgtctagttttgctggtttcttcttgttaatttgaagatatggagaaaggagggttaagcttcaggcaaatgtttaattcagaaagatatgttttggtcttctagtgctgtatttgtatatgttgcactgtatggctatatgtttaaagt-ctgtttatcttaactttcacctgtgctactttttccagAAAGCCCATGTTCAACAATTTTTGGCTACTGAAGATGCACTAAACAAAGCAGCTGAAGCTCGTGATTTATGCCACAAGTTTATTAACCGTTTGCATGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatttatctctgtggagttgtttaattgatatcaagccaatgttcactcctgcagAAAGCACATGTTCAGCAATTTGTAGCTACTGAAGATGCACTCAATAAAGCAGCAGAAGCTAGAAATTTGTGTCAAAAGCTTATAAAACGTCTACAAGGAA
aattgat putative branch site (score: 4)
ttcactcct putative PPT
ttgtttaattgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attttgtggcacattttgctacttatgtttattgcattctactcagatttatctctgtggagttgtttaattgatatcaagccaatgttcactcctgcagAAAGCACATGTTCAGCAATTTGTAGCTACTGAAGATGCACTCAATAAAGCAGCAGAAGCTAGAAATTTGTGTCAAAAGCTTATAAAACGTCTACAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - -ttgctac
- - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagccaa