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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttgtactgtgagatggcttgacaaattgaagtatggcttcttgttcttacatgttcagtgcaaaatttaaatggtttccttgtgttctctgattttagGGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATTGGAGGAAGAACTGGTGGGCTGAGTGTATGTCTGTCTAATACAGATGGCG

Basic information

species Vitis vinifera
transcript Vv14s0081g00620.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26266822|gb|CA817885.1|CA817885
EST:     GCATCTCTTCGCCAGCCAGCCACCATCAGGAGGGCAATGTTGCATATGAG                         GGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATT
genomic: GCATCTCTTCGCCAGCCAGCCA-CATCAGGA-GGCAATGTTGCATATGAGgtgaaaactt ... ctgattttagGGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATT
EST: gi|26264753|gb|CA815816.1|CA815816
EST:     ATGCATCTCTTCGCCAGCCAGCCACATCAGGAGGCAATGTTGCATATGAG                         GGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATT
genomic: ATGCATCTCTTCGCCAGCCAGCCACATCAGGAGGCAATGTTGCATATGAGgtgaaaactt ... ctgattttagGGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATT
EST: gi|110358449|gb|EC922670.1|EC922670
EST:     CAGCCAGCCACATCAGGAGGCAATGTTGCATATGAG                         GGACGGTATGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATT
genomic: CAGCCAGCCACATCAGGAGGCAATGTTGCATATGAGgtgaaaactt ... ctgattttagGGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATT
EST: gi|110375770|gb|EC940787.1|EC940787
EST:     ATGCATCTCTTCGCCAGCCAGCCACATCAGGAGGCAATGTTGCATATGAG                         GGACGGTTTGAAATCCTTTCACTCACCGGATCTTATGTCCGTACTGAGATT
genomic: ATGCATCTCTTCGCCAGCCAGCCACATCAGGAGGCAATGTTGCATATGAGgtgaaaactt ... ctgattttagGGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttacatgttcagtgcaaaatttaaatggtttccttgtgttctctgattttagGGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATTGGAGGAAGAACTGGTGGGCTGAGTGTATGTCTGTCTAATACAGATGGCG
                               tttccttgtgttctct  CT-rich tract
                  aaaatttaaatggttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttgtactgtgagatggcttgacaaattgaagtatggcttcttgttcttacatgttcagtgcaaaatttaaatggtttccttgtgttctctgattttagGGACGGTTTGAAATCCTTTCACTCACTGGATCTTATGTCCGTACTGAGATTGGAGGAAGAACTGGTGGGCTGAGTGTATGTCTGTCTAATACAGATGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - -tggcttg
- - - - - - - - - - - - aaattga
- - - - - - - - - - - - - - - - -tatggct
- - - - - - - - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaatt