Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTG

Basic information

species Vitis vinifera
transcript Vv14s0081g00010.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G138268_T01 (Zea mays), 3'ss of exon 3
gtaagttacaacatttg-acaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTG
|| ||  ||  |||     |  |  || |     || | |  ||   |   |   ||    |||||   | ||  || |||||  ||| | |     ||||   ||||||||||||||||||| ||||||||| | || || ||||||||||| || ||||| || || |
gtgagc-actgcatgcatgcgcttcttcctgcactatactccttattatatt---attgcctaatcggaaaataataataatt--tccatttc----attt---tcagGATGTTCGTCGAATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGG

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G36790.1 (Glycine max), 3'ss of exon 2
gtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTG
                | || |        ||| |  |  ||||     ||| | | ||||| || |   |||| |   | ||    || ||   ||||| |  |||||||||||| ||||| ||||||||  | |||||||||||||| |||||||| ||||| ||||
----------------gtcagtgccccttcattcat-tcatttccttttctttctttaatta-tcaacctatttaat--actacctttttttgacaatttca--cagGATGTTCGTTGAATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G40760.1 (Glycine max), 3'ss of exon 2
gtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaat----cagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTG
         ||   | ||| ||  ||||   | |||       | |   | |  || | |    ||||    |  | |||  | | ||  ||||||  |  |||    ||| |||||||| ||||| ||||||||| |||| |||||||||||||| ||||| ||||| || |
-------gtaagtctggaccattatttc---tctaagcacacaccacatccttaattattaggaccattt-ctcgattaaacattactaatttggatatataatttcacagAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAG

upper sequence: Vv14s0081g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G30440.3 (Glycine max), 3'ss of exon 2
gtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTG
|| |||| |  |  ||      |||  |  ||||   || ||       ||| | | | || |||  |   || ||||| |     ||| ||   ||||| |  ||| |||||||| ||||| ||| ||||| | |||||||||||||| || ||||| ||||| ||||
gtcagttccccctctt-----cattcccttatttcccttttt-------ctttctttagtttatcattcccttatactact-----ctttttcacaatttca--cagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370217|gb|EC929130.1|EC929130
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|34363463|gb|CF405048.1|CF405048
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110386441|gb|EC951035.1|EC951035
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110357652|gb|EC921294.1|EC921294
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110357044|gb|EC920312.1|EC920312
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTTGCA-GCGCTTGCGCATAATGAAAGGATCCGAGG
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTT-GCAAGCGCTTGCGCATAATGAAAGGATCCGAGG
EST: gi|110358344|gb|EC922490.1|EC922490
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|34319372|gb|CF372126.1|CF372126
EST:     AGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: AGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|30321834|gb|CD005096.1|CD005096
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110382415|gb|EC939426.1|EC939426
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|30125491|gb|CB910830.1|CB910830
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110421032|gb|EC987319.1|EC987319
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110370114|gb|EC934294.1|EC934294
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110387706|gb|EC952397.1|EC952397
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110359936|gb|EC922298.1|EC922298
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110395704|gb|EC961374.1|EC961374
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|30129712|gb|CB915051.1|CB915051
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110389158|gb|EC953976.1|EC953976
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|32245124|gb|CD710943.1|CD710943
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110359422|gb|EC920879.1|EC920879
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110685024|gb|EE062971.1|EE062971
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATTNATGAAAG-ATTCGAGG
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATA-ATGAAAGGATCCGAGG
EST: gi|45771409|gb|CN007261.1|CN007261
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110360880|gb|EC924322.1|EC924322
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110421723|gb|EC988023.1|EC988023
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110726327|gb|EE102012.1|EE102012
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110357840|gb|EC921623.1|EC921623
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110424930|gb|EC991305.1|EC991305
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|18459524|gb|BM437802.1|BM437802
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110359559|gb|EC921247.1|EC921247
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|71874129|gb|DT023184.1|DT023184
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|110357411|gb|EC920932.1|EC920932
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGGCA-GCGCTTGCGCATAATGAAAGGATCCGAGG
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTG-CAAGCGCTTGCGCATAATGAAAGGATCCGAGG
EST: gi|110685504|gb|EE062284.1|EE062284
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|22010332|gb|BQ795366.1|BQ795366
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|18458727|gb|BM437005.1|BM437005
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|26258642|gb|CA809705.1|CA809705
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|34414970|gb|CF413724.1|CF413724
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
EST: gi|18459647|gb|BM437925.1|BM437925
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCT
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCT
EST: gi|110703290|gb|EE080007.1|EE080007
EST:     TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGA                         GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC
genomic: TATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttaca ... tttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcaattaatccatagattttactaattaatccttctttggaatttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTG
     aattaatccatagatt  TA-rich tract