Sequence
atgc intronic sequence ATGC exonic sequencegtaaagtgagagaactttttatgaccaactcttttatgatttacaagtatcatgaatgataattgaccttaagcagGTTCCAAGGTACAACAGATGCTGTGGCAGCTCAATTTTTTCTGAAGAATGTACACCCTGAAATGAGGAAAGCTGCTTCTGATTTATTTGGATCTCCAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G05700.1 (Glycine max), 3'ss of exon 3
gtaaagtgagagaactttttatgaccaactcttttatgatttacaagtatcatg-aatgataattgaccttaag---cagGTTCCAAGGTACAACAGATGCTGTGGCAGCTCAATTTTTTCTGAAGAATGTACACCCTGAAATGAGGAAAGCTGCTTCTGATTTATTTGGATCTCCAGAA
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gtaaagtcacatggtttttc--------tacttatcagtctttcaagtatcatataatgactatgaaccttatattttagGTTTCAAGGAACTACAGATGCTGTGGCAGCTCAATTTTTCTTGAAAAATATACACTCTCAGATGAGGATTGCTGCTTTTGATTTATTTGGTGATCCACAA
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G26840.1 (Glycine max), 3'ss of exon 3
gtaaagtgagagaactttttatgaccaactcttttatgatttacaagtatcatg-aatgataattgaccttaag---cagGTTCCAAGGTACAACAGATGCTGTGGCAGCTCAATTTTTTCTGAAGAATGTACACCCTGAAATGAGGAAAGCTGCTTCTGATTTATTTGGATCTCCAGAA------------------------------
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gtaaagtcacatggttttt------ctacttatcagtctttcaagaatatcatataatgactatgaaccttatattttaggtttgaaggaactactgatgctgtggcagCTCAGTTTTTCTTGAA-AATATACACTCTCAGATGAGGATTGCTGCTTTTGATTTATTTGGTGATCCACAAGTTCTGGGATCTCAACCAAATGTATTTGGA
upper sequence: Vv14s0068g01550.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G26950.1 (Arabidopsis thaliana), 3'ss of exon 3
----------gtaaagtgag---agaactttttatgaccaactc-ttttatgat--ttacaagtatca-tgaat--gataattgaccttaagcagGTTCCAAGGTACAACAGATGCTGTGGCAGCTCAATTTTTTCTGAAGAATGTACACCCTGAAATGAGGAAAGCTGCTTCTGATTTATTTGGATCTCCAGAA
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gtcagttgaagaaaagaaagtacagaagatacaactttgaattcattttgtgaaagttataatcattactgagtcgagcatttggtttt---cagGTTTCAAGGCACGACAGACGCTGTGGCAGCTCAGTTTTTCCTCAAGAATGTGCATCCTGAGATGAGAGCTGCTGCATTTGAGCTATTTGGAGAGCAAGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaccaactcttttatgatttacaagtatcatgaatgataattgaccttaagcagGTTCCAAGGTACAACAGATGCTGTGGCAGCTCAATTTTTTCTGAAGAATGTACACCCTGAAATGAGGAAAGCTGCTTCTGATTTATTTGGATCTCCAGAA
aattgac putative branch site (score: 3)
ttttatgatttacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaagtgagagaactttttatgaccaactcttttatgatttacaagtatcatgaatgataattgaccttaagcagGTTCCAAGGTACAACAGATGCTGTGGCAGCTCAATTTTTTCTGAAGAATGTACACCCTGAAATGAGGAAAGCTGCTTCTGATTTATTTGGATCTCCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT