1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgttatcagatggggagtggtctttgttttctggagtgcagcaattttgactagtagatacagtcctctagactttgattatttctctgttgtctatcagCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTCTGGATTCGGCAGGCTTCCACGGTATGCTGTAGCTCAAACGCCCGAAAA
species | Vitis vinifera |
transcript | Vv14s0068g01200.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAG CAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTEST: gi|22015086|gb|BQ800120.1|BQ800120
genomic: CTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAGgtatacttct ... tgtctatcagCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTT
EST: CTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAG CAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTEST: gi|110422274|gb|EC988592.1|EC988592
genomic: CTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAGgtatacttct ... tgtctatcagCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTT
EST: ATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAG CAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTEST: gi|352769004|gb|FQ468195.1|FQ468195
genomic: ATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAGgtatacttct ... tgtctatcagCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTT
EST: CTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAG CAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTT
genomic: CTGTCATCAGCTGCTTCAATGGGTTTGCATTGGATGTATTCAGAGCTGAGgtatacttct ... tgtctatcagCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTT
tttgactagtagatacagtcctctagactttgattatttctctgttgtctatcagCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTCTGGATTCGGCAGGCTTCCACGGTATGCTGTAGCTCAAACGCCCGAAAA
tttctctgttgtct CT-rich tract
tttgattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatcagatggggagtggtctttgttttctggagtgcagcaattttgactagtagatacagtcctctagactttgattatttctctgttgtctatcagCAATGCAGGGAAGGCCAGGATGTACTGCCTGAACAAATCAAAGCAGTACTTCTGGATTCGGCAGGCTTCCACGGTATGCTGTAGCTCAAACGCCCGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - gggagtg
- - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - -gcagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtcctc