1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtgctgacaaacacacactatttcactatatatacatatatcatgtgctaattatttgagaatggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAAGATGATAGTGGCAGATGATGGAACCCTGTCAGAGATAATTGTTCAAGGA
species | Vitis vinifera |
transcript | Vv14s0068g01020.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGC CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAAEST: gi|110391819|gb|EC956821.1|EC956821
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
EST: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATCTTAAGTCCTTTAGC CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAAEST: gi|26258582|gb|CA809645.1|CA809645
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
EST: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATCTTAAGTCCTTTAGC CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAAEST: gi|26257822|gb|CA808885.1|CA808885
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
EST: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATCTTAAGTCCTTTAGC CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAAEST: gi|349823416|gb|FQ423227.1|FQ423227
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
EST: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGC CGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
genomic: CCGGATGTTGGCAATAACTGGTTCTGGCTCACCATTTTAAGTCCTTTAGCgtaagtgctg ... tggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAA
ctatttcactatatatacatatatcatgtgctaattatttgagaatggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAAGATGATAGTGGCAGATGATGGAACCCTGTCAGAGATAATTGTTCAAGGA
tgctaat putative branch site (score: 2)
tatatatacatatatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctgacaaacacacactatttcactatatatacatatatcatgtgctaattatttgagaatggaaaacagCGGAGCATATTACTGGAAGCGAGCATCAAGAAAGGAGCAGATCAAGGTGAAGATGATAGTGGCAGATGATGGAACCCTGTCAGAGATAATTGTTCAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA