Sequence
atgc intronic sequence ATGC exonic sequence...gtgcacgtgtgagagagagatgttttgttatgttttaaacttatcttctccatttctttatcgtttccattttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G27800.1 (Glycine max), 3'ss of exon 3
gtgcacgtgtgagagagagatgttttgttatgttttaaacttatcttctccatttctttatcgtttcc---attttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT
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---aatccttcaaagtgactaatttggtgacataaatatttgataacatcagactgaatattgtttcttaagttatctgaagatacttcgattctttatatagGTCATGGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAAT
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G05180.1 (Glycine max), 3'ss of exon 3
--gtgcacgtgtgagagagagatgttttgttatgttt-taaacttatcttctccatttctttatcgtttccattttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT
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agttaggggtggaaagaatgaaagtatcactacataagtacatgcatcttttaaatattttttc---tcatgttatctgaagattcttcaatcctttatgtagGTCATGGAAAAGAGCAACTTCAAGATAGTGACGGATGATGAGATTGATGTTGCACATTCAGGCCAGTATCTTCTAAATCTTCCCATAACGGTTGATGAAT
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 3
gtgcacgtgtgagagagagatgttttgttatgttttaa-acttatcttctccatttctttatcgtttccattttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT
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gggactgattgaaagaagta-gcactatagcactacaacagtttaaatatctgtttttgtgtttcttatggtatcttaagatgatttgattctttatacagGTCATGAAAAAAAGCAACTTCAAGATTGCTACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATCTTCTAAATCTTCCCATTACAGTAAATGAAT
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G26360.1 (Glycine max), 3'ss of exon 3
gtgcacgtgtgagagagagatgttttgttatgttttaa-acttatcttctccatttctttatcgtttccattttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT
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-ggtactggttgaaagaagtagcactatagcactacaacattttaaatatttgtatttgtgtttctaatggtatctgaagatgatttgattctttatgcagGTCATGAAAAAAAGCAACTTCAAGATTGCAACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATATTCTAAATCTTCCAATTACAGTAAATGAAT
upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgcacgtgtgagagagagatgttttgttatgttttaaacttatcttctccatttctttatcgtttccattttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT
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gttactctctttgattaggatattatctcctcccttatatttatct-----atgtcattgttcttgaaatgtgcct--ctttttccccccgcttataaagGTTATGGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctccatttctttatcgtttccattttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT
tttctttatcgtttcc CT-rich tract
tttccatttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcacgtgtgagagagagatgttttgttatgttttaaacttatcttctccatttctttatcgtttccattttttttcctttctctcttcttttatacagGTGATGGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAAT
- -cacgtgt
- - - - - -agagaga