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gtaaagtccaatcttatgctgcttgcttttttagatgtcttctgcttctgtatctcagtatctctacttagctttaagcatgcatttcttgatatgcagGTTTACTATTTTTCTCTCTGGGAAATTGTCTTAATTTCATTTCTTTCGGATATGCTGCTCAG
species | Vitis vinifera |
transcript | Vv14s0068g00780.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAAAGCTTGTACCAAAGCCTATCATATACTTTCAGACTTGGAGAGTTG GTTTACTATTTTTCTCTCTGGGAAATTGTCTTAATTTCATTTCTTTCGGATEST: gi|37184677|gb|CF604031.1|CF604031
genomic: TGGAAAGCTTGTACCAAAGCCTATCATATACTTTCAGACTTGGAGAGTTGgtaaagtcca ... tgatatgcagGTTTACTATTTTTCTCTCTGGGAAATTGTCTTAATTTCATTTCTTTCGGAT
EST: TGGAAAGCTTGTACCAAAGCCTATCATATACTTTCAGACTTGGAGAGTTG GTTTACTATTTTTCTCTCTGGGAAATTGTCTTAATTTCATTTCTTTCGGAT
genomic: TGGAAAGCTTGTACCAAAGCCTATCATATACTTTCAGACTTGGAGAGTTGgtaaagtcca ... tgatatgcagGTTTACTATTTTTCTCTCTGGGAAATTGTCTTAATTTCATTTCTTTCGGAT
cttctgtatctcagtatctctacttagctttaagcatgcatttcttgatatgcagGTTTACTATTTTTCTCTCTGGGAAATTGTCTTAATTTCATTTCTTTCGGATATGCTGCTCAG
tcttgat putative branch site (score: 4)
catttctt CT-rich tract
atttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtccaatcttatgctgcttgcttttttagatgtcttctgcttctgtatctcagtatctctacttagctttaagcatgcatttcttgatatgcagGTTTACTATTTTTCTCTCTGGGAAATTGTCTTAATTTCATTTCTTTCGGATATGCTGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT